BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZF04RM1.SCF screened BAC_end
(942 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1774 1251 0.0
>3x_Contig1774
Length = 27771
Score = 1251 bits (631), Expect = 0.0
Identities = 704/723 (97%), Gaps = 4/723 (0%)
Strand = Plus / Minus
Query: 48 aaacaagatgcacccgtctgaaaatctgatgtaacaactgtcaaccaacacaatggacag 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14711 aaacaagatgcacccgtctgaaaatctgatgtaacaactgtcaaccaacacaatggacag 14652
Query: 108 ttactgatgcttcaattgtctaagtcaaaggttcactttcgttgtttctacatgtttagc 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14651 ttactgatgcttcaattgtctaagtcaaaggttcactttcgttgtttctacatgtttagc 14592
Query: 168 tatttcgagatctcgtaaaactgacagaaagtgaaaaatataaaaccgggtaacatcaat 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14591 tatttcgagatctcgtaaaactgacagaaagtgaaaaatataaaaccgggtaacatcaat 14532
Query: 228 gagagcttcattatttaatgaacagtgttatgcatcactttcgtttcttaatagctgcta 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14531 gagagcttcattatttaatgaacagtgttatgcatcactttcgtttcttaatagctgcta 14472
Query: 288 aatacacagagatgatgtctatacatgagttgttttaacagcctgagtgctttgcaacga 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14471 aatacacagagatgatgtctatacatgagttgttttaacagcctgagtgctttgcaacga 14412
Query: 348 tcactatctgttgccagaagtgtttgtatgattgtttaagggattttctagtaactgata 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14411 tcactatctgttgccagaagtgtttgtatgattgtttaagggattttctagtaactgata 14352
Query: 408 gtttagttcaaatcatattgcaaagaacatgatatttacctctccttcagcaggtggctg 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14351 gtttagttcaaatcatattgcaaagaacatgatatttacctctccttcagcaggtggctg 14292
Query: 468 ggcgtcgtctccgacacctttcgttgttatttcccccaatttggaaaccattgaatctaa 527
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 14291 ggcgtcgtctccgacacc-ttcgttgttatttcccccaatttggaaaccattgaatctaa 14233
Query: 528 tattcacgttgcctcttagaaatgagacttccaaagaaatgagaattacagcaagtgtta 587
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 14232 tattcacgttgcctcttagaaatgagactacaaaagaaatgagaattacagcaagtgtta 14173
Query: 588 ttgtgatcatgagcaccttttcattcatttcaataggaatttgatttgatgtaccttatg 647
|||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |||
Sbjct: 14172 ttgtgatcatgagcacctcttcattcatttcaataggaa-ttgatttgatgtacctcatg 14114
Query: 648 ggacttctgtaccacaatttacccttgaagaacctggtctcttgagtaggtttcttaact 707
| ||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||
Sbjct: 14113 gcacttctgtaccacgatttagcctcgaagaacctggtctcttgagtaggtttcttaac- 14055
Query: 708 tttttttccttaaggattgactctttcaggaaaagttccttttgtcccttttttttggga 767
||||||||| | |||| |||||||| ||||| ||| ||| |||||||| |||||||||||
Sbjct: 14054 tttttttccatcaggagtgactcttccaggagaag-tccatttgtcccatttttttggga 13996
Query: 768 gcc 770
|||
Sbjct: 13995 gcc 13993
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8371
Number of Sequences: 1807
Number of extensions: 8371
Number of successful extensions: 74
Number of sequences better than 1.0e-20: 1
length of query: 942
length of database: 10,358,551
effective HSP length: 16
effective length of query: 926
effective length of database: 10,329,639
effective search space: 9565245714
effective search space used: 9565245714
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)