BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZF06FM1.SCF screened BAC_end
(914 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1503 1257 0.0
>3x_Contig1503
Length = 10719
Score = 1257 bits (634), Expect = 0.0
Identities = 731/758 (96%), Gaps = 4/758 (0%)
Strand = Plus / Minus
Query: 89 cttaacctattttgccacttgtagatgaagtagatcttgcacgtttccaagggaaaggtc 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6873 cttaacctattttgccacttgtagatgaagtagatcttgcacgtttccaagggaaaggtc 6814
Query: 149 aagacaacgtccaaaaacataaattgatacagaatgagcgatttagaatgtatgttatta 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6813 aagacaacgtccaaaaacataaattgatacagaatgagcgatttagaatgtatgttatta 6754
Query: 209 gtgtaatctgggcgcatatcttttgaaaagtacatgtaacgttgaattcgattgacaatg 268
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6753 gtgtaatctgggcgcagatcttttgaaaagtacatgtaacgttgaattcgattgacaatg 6694
Query: 269 tctatcgatgggattaacagctgaaaccaaagtatactaactatcattcctaatttgaaa 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6693 tctatcgatgggattaacagctgaaaccaaagtatactaactatcattcctaatttgaaa 6634
Query: 329 ccgataatctcagtcaatattaaacatgcaggaaaagtttacccaatcacaataaatgcc 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6633 ccgataatctcagtcaatattaaacatgcaggaaaagtttacccaatcacaataaatgcc 6574
Query: 389 gatgctaaggcagcagacctaagagctaaagttgaagctctgactcttgttccacaagaa 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6573 gatgctaaggcagcagacctaagagctaaagttgaagctctgactcttgttccacaagaa 6514
Query: 449 agacaaaaatacatggttaagggaggtttaacggataacgaaacgttagtttcatctgtc 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6513 agacaaaaatacatggttaagggaggtttaacggataacgaaacgttagtttcatctgtc 6454
Query: 509 atcaaagctaaggctacagtaatggttcttggaacccctgatgctaatttagtctttaaa 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6453 atcaaagctaaggctacagtaatggttcttggaacccctgatgctaatttagtctttaaa 6394
Query: 569 ccaacggatgatacgaaatttttggaggatttaactgacaaggaaagattgatgcaagag 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6393 ccaacggatgatacgaaatttttggaggatttaactgacaaggaaagattgatgcaagag 6334
Query: 629 gataccattccaatggggttaagaaatatgggtaatacatgtttattcaatgcatctttt 688
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 6333 gataccattccaatggggttaagaaatatgggtaatacatgttatttcaatgcatctttg 6274
Query: 689 gcagctctttacaggattaaacctttgagagagaaggtatttggcctataacgagccaat 748
|||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 6273 caagctctatacaggattaaacctttgagagagaaggta-ttggcctataacgagccaaa 6215
Query: 749 tccttgacttaacggacaggtaattctacagcttgaaaaattgttt-aatgccatttgct 807
|||| || |||||||| || | |||||| ||| ||||||||| |||| ||||||||
Sbjct: 6214 tcctgatctacacggacagttagtcatacagc-tgagaaattgtttcaatg-catttgct 6157
Query: 808 caaaggaaagaaaagagattcaccccaatttttctact 845
||||||||||| ||| |||||||||||| |||||||
Sbjct: 6156 caaaggaaagagaaggagttcaccccaattattctact 6119
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6782
Number of Sequences: 1807
Number of extensions: 6782
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 914
length of database: 10,358,551
effective HSP length: 16
effective length of query: 898
effective length of database: 10,329,639
effective search space: 9276015822
effective search space used: 9276015822
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)