BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZF06RM1.SCF screened BAC_end
(925 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1770 1084 0.0
>3x_Contig1770
Length = 29267
Score = 1084 bits (547), Expect = 0.0
Identities = 637/663 (96%), Gaps = 3/663 (0%)
Strand = Plus / Plus
Query: 49 ttagccataccaaattta-ataacgcaacaggttgctgttcactgtattccatcaggaac 107
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 8043 ttagccataccaaatttagataacgcaacaggttgctgttcactgtattccatcaggaac 8102
Query: 108 acttgagcactgtcaccaacagtcaagtccgcagaatgttggaaaatttcgtgcacatcc 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8103 acttgagcactgtcaccaacagtcaagtccgcagaatgttggaaaatttcgtgcacatcc 8162
Query: 168 ttacctttatccttctttctcttacgggtctttatcttactgaacactatgttggtacca 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8163 ttacctttatccttctttctcttacgggtctttatcttactgaacactatgttggtacca 8222
Query: 228 ggacgaatccgtttcccgaaatgatttctatgaaagtgtctcaactgatcttttggtaac 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8223 ggacgaatccgtttcccgaaatgatttctatgaaagtgtctcaactgatcttttggtaac 8282
Query: 288 acaactttgtagaatggagattgtaggcgcgtcgccggttgagaatgttctatattcaaa 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8283 acaactttgtagaatggagattgtaggcgcgtcgccggttgagaatgttctatattcaaa 8342
Query: 348 ttcgaaattgtagatctgatctttttttgatagttctttttcaaaatcttgtaagtgtca 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8343 ttcgaaattgtagatctgatctttttttgatagttctttttcaaaatcttgtaagtgtca 8402
Query: 408 tcgttagagatgttgaactttgctagtagagatttctcattatatggtattagaggttta 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8403 tcgttagagatgttgaactttgctagtagagatttctcattatatggtattagaggttta 8462
Query: 468 acgaccttttgtgccgattcgattttattctcattaggcaaaataagtaatcgctcatca 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8463 acgaccttttgtgccgattcgattttattctcattaggcaaaataagtaatcgctcatca 8522
Query: 528 ttcatatcaattggcggttctttagcactcacctttacatttatgatatcattttcgttt 587
||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct: 8523 ttcatatcaattggcggttctttagcactcaccttaccatttatgatatcatcttcgttc 8582
Query: 588 catttcccgtctttcccattcttttctaaagggatcttaactgctggcgggattcttttg 647
|||| || ||||||||||| | |||||||| | ||| |||||||||||| | || |||
Sbjct: 8583 cattcccagtctttcccatcttcttctaaagtgttctcaactgctggcggattcctcttg 8642
Query: 648 ttactcgtcattggcttcctcaattttttttttcgtcaaccattttttattaatcccatt 707
||||||||||||||| ||||| ||||| | | |||||||| ||||| | ||||||||||
Sbjct: 8643 ttactcgtcattggc-tcctc-attttctctatcgtcaacaattttctcataatcccatt 8700
Query: 708 cat 710
|||
Sbjct: 8701 cat 8703
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,100
Number of Sequences: 1807
Number of extensions: 11100
Number of successful extensions: 88
Number of sequences better than 1.0e-20: 1
length of query: 925
length of database: 10,358,551
effective HSP length: 16
effective length of query: 909
effective length of database: 10,329,639
effective search space: 9389641851
effective search space used: 9389641851
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)