BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZF07FM1.SCF screened BAC_end
(968 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig532 1065 0.0
>3x_Contig532
Length = 2251
Score = 1065 bits (537), Expect = 0.0
Identities = 605/621 (97%), Gaps = 5/621 (0%)
Strand = Plus / Plus
Query: 168 accaatcaagaagcttgagtttctcctatatcagatatggcagcagcaggaagaggcagg 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14 accaatcaagaagcttgagtttctcctatatcagatatggcagcagcaggaagaggcagg 73
Query: 228 aagagctcgagggattctcgctcagctaacaaagcaaccagctataaaatcgatacagac 287
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74 aagagctcgagggtttctcgctcagctaacaaagcaaccagctataaaatcgatacagac 133
Query: 288 gagttagacattgaagatgatgaaaaggatcaagagtaccctggaccagccaatgatgat 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 gagttagacattgaagatgatgaaaaggatcaagagtaccctggaccagccaatgatgat 193
Query: 348 gattacgatgatgacccagatgctgatatcgaaaacgagggtaaaccatctcgttccaag 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 gattacgatgatgacccagatgctgatatcgaaaacgagggtaaaccatctcgttccaag 253
Query: 408 cgcaaggccgcttcgagcacacctgttccagtggtactagcgacaagaggaaggccttca 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 cgcaaggccgcttcgagcacacctgttccagtggtactagcgacaagaggaaggccttca 313
Query: 468 aagaggaaaagagaagaagatttgaacgatcccttaagacagaaactaccgtacccagtg 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 aagaggaaaagagaagaagatttgaacgatcccttaagacagaaactaccgtacccagtg 373
Query: 528 gacgaaaacgggtctccatacccaattgtgaatgacgagtattcattacctgaggatcca 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 gacgaaaacgggtctccatacccaattgtgaatgacgagtattcattacctgaggatcca 433
Query: 588 gagggtgaaaccaagatcaccaagaatggtgatcttctagagggaagacaatttgtagtc 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 gagggtgaaaccaagatcaccaagaatggtgatcttctagagggaagacaatttgtagtc 493
Query: 648 agaactttcacggtaccttccagaggtgaaatttaatacatgctttctactgaaccaacc 707
|||||||||||||||||||||||||||||| || ||||||||||||||||||| || | |
Sbjct: 494 agaactttcacggtaccttccagaggtgaagttaaatacatgctttctactgagcc-agc 552
Query: 708 ccgtgccggtttgatttagaagactcatactttgttttttcagtaccatccaaacctata 767
||||||| ||| | || || |||||||||| ||||| || ||||||||||||||||||||
Sbjct: 553 ccgtgcc-gttgggttcag-agactcatac-ttgttcttccagtaccatccaaacctata 609
Query: 768 caaattggttattctcgcaat 788
||||||| ||| |||||||||
Sbjct: 610 caaattgatta-tctcgcaat 629
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7164
Number of Sequences: 1807
Number of extensions: 7164
Number of successful extensions: 76
Number of sequences better than 1.0e-20: 1
length of query: 968
length of database: 10,358,551
effective HSP length: 16
effective length of query: 952
effective length of database: 10,329,639
effective search space: 9833816328
effective search space used: 9833816328
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)