BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZF08FM1.SCF screened BAC_end
(956 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1786 983 0.0
>3x_Contig1786
Length = 33838
Score = 983 bits (496), Expect = 0.0
Identities = 548/560 (97%), Gaps = 4/560 (0%)
Strand = Plus / Minus
Query: 86 ccaagtaatttggttgctaacccagacttggtcgatgctgctaaggacgctgatatcctt 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23602 ccaagtaatttggttgctaacccagacttggtcgatgctgctaaggacgctgatatcctt 23543
Query: 146 gtctttaacattcctcatcaattcttgccaagaatctgttctcaactaaagggtaacgtg 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23542 gtctttaacattcctcatcaattcttgccaagaatctgttctcaactaaagggtaacgtg 23483
Query: 206 aagcctcaggctcgtgctatctcttgtttgaagggtttcgacgtcggtaaggatggtgtt 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23482 aagcctcaggctcgtgctatctcttgtttgaagggtttcgacgtcggtaaggatggtgtt 23423
Query: 266 aagctattgtctacttatatcaaggaaactttgaatatcgaatgtggtgctctatccggt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23422 aagctattgtctacttatatcaaggaaactttgaatatcgaatgtggtgctctatccggt 23363
Query: 326 gctaacttggctccagaagtcgccaaggaaaattggtccgaaaccactgttgcataccaa 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23362 gctaacttggctccagaagtcgccaaggaaaattggtccgaaaccactgttgcataccaa 23303
Query: 386 atcccagaagattacaagggtccaggtaaggatgttgaccattctttgttgaaagccttg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23302 atcccagaagattacaagggtccaggtaaggatgttgaccattctttgttgaaagccttg 23243
Query: 446 ttccacagaccttacttccacgtcaacgtcattgaagatgttgctggtatttcggtcgcg 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23242 ttccacagaccttacttccacgtcaacgtcattgaagatgttgctggtatttcggtcgcg 23183
Query: 506 ggtgctttgaagaacgttatcgccttaggttgtggttacgtttgaagtttgggcttgggg 565
|||||||||||||||||||||||||||||||||||||||||| | |||||||| |||||
Sbjct: 23182 ggtgctttgaagaacgttatcgccttaggttgtggttacgttgaaggtttgggc-tgggg 23124
Query: 566 taacaacgccagtgcttgcctttc-aagagtccggcctttttgaaatgatcaaattttgt 624
||||||||||||||| |||| ||| |||||| ||| || | |||||||||||||||| ||
Sbjct: 23123 taacaacgccagtgc-tgccattcaaagagt-cggtctctctgaaatgatcaaatttggt 23066
Query: 625 cgtactttcttcccagaatg 644
||||||||||||||||||||
Sbjct: 23065 cgtactttcttcccagaatg 23046
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8029
Number of Sequences: 1807
Number of extensions: 8029
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 956
length of database: 10,358,551
effective HSP length: 16
effective length of query: 940
effective length of database: 10,329,639
effective search space: 9709860660
effective search space used: 9709860660
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)