BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZF08RM1.SCF screened BAC_end
(941 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1687 1249 0.0
>3x_Contig1687
Length = 12800
Score = 1249 bits (630), Expect = 0.0
Identities = 682/694 (98%), Gaps = 4/694 (0%)
Strand = Plus / Minus
Query: 50 tgagggaatcatcccatgagggcaagaaaagtaagacaaagagatcacataaagatggaa 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4103 tgagggaatcatcccatgagggcaagaaaagtaagacaaagagatcacataaagatggaa 4044
Query: 110 aagatgagtacacgttgttcttggaaaagaagttgaaatatctagaaaaattagttgaca 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4043 aagatgagtacacgttgttcttggaaaagaagttgaaatatctagaaaaattagttgaca 3984
Query: 170 tgaaaccagatacgaactcgtataaagagaaactcagcaaatacaagaaggttgctcatc 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3983 tgaaaccagatacgaactcgtataaagagaaactcagcaaatacaagaaggttgctcatc 3924
Query: 230 ttttggacaacggagaacctgatcaggatgatataacaactgtgcttcctcccacggcgg 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3923 ttttggacaacggagaacctgatcaggatgatataacaactgtgcttcctcccacggcgg 3864
Query: 290 cacaacaaactgcaccttctaatacacttgctgcttcgctatcacagcagccgaatgggg 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3863 cacaacaaactgcaccttctaatacacttgctgcttcgctatcacagcagccgaatgggg 3804
Query: 350 cagcaggggtagctcaggatcaacagataacgaggattaggtcacctatactacctccgc 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3803 cagcaggggtagctcaggatcaacagataacgaggattaggtcacctatactacctccgc 3744
Query: 410 ctccgaaaactaagtttttacctctacatcaacagtctcaaaatcaaccacaacgttctg 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3743 ctccgaaaactaagtttttacctctacatcaacagtctcaaaatcaaccacaacgttctg 3684
Query: 470 gcatgattaagcctcctcattctcatgaacgagcattggaatccttagcatctgattctc 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3683 gcatgattaagcctcctcattctcatgaacgagcattggaatccttagcatctgattctc 3624
Query: 530 tcgaatcaatcgattattcacgttgcattttcgcaaaatacaacttgaaagagttcttgt 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3623 tcgaatcaatcgattattcacgttgcattttcgcaaaatacaacttgaaagagttcttgt 3564
Query: 590 catatgatccagcttttcgatttgatgaacaattgagtagagcgtttttggacacctact 649
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 3563 catatgatccagctttcgaatttgatgaacaattgagtagagcgtttttggacacctact 3504
Query: 650 ttac-agacttcaatt-aaatatccacttctagatgaacaggagatttacactttcca-a 706
|||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |
Sbjct: 3503 ttacaagacttcaattcaaatatccacttctagatgaacaagagatttacactttccaca 3444
Query: 707 atggatatatttattaataatgttcacttatatt 740
||| |||| ||| |||||||||||||| |||||
Sbjct: 3443 atgattata-ttaataataatgttcactcatatt 3411
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7296
Number of Sequences: 1807
Number of extensions: 7296
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 1
length of query: 941
length of database: 10,358,551
effective HSP length: 16
effective length of query: 925
effective length of database: 10,329,639
effective search space: 9554916075
effective search space used: 9554916075
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)