BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC27ZF09RM1.SCF screened BAC_end (890 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig521 1070 0.0 >3x_Contig521 Length = 2327 Score = 1070 bits (540), Expect = 0.0 Identities = 617/640 (96%), Gaps = 2/640 (0%) Strand = Plus / Plus Query: 41 gcttgttcgtcactttaataataatagtaacagcatgagcagtagccactgctattacta 100 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1298 gcttgttcgtcactttaataataatagtaacagcatgagcagtagccactgctattacta 1357 Query: 101 tacctagttttagtgatgattgagatttagcagcaggaagtatggatttgagaagaattc 160 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1358 tacctagttttagtgatgattgagatttagcagcaggaagtatggatttgagaagaattc 1417 Query: 161 ttatcataatgtttcgtggttttggggttcgcttcttttcttttgaatgatgttttataa 220 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1418 ttatcataatgtttcgtggttttggggttcgcttcttttcttttgaatgatgttttataa 1477 Query: 221 tttgcgatcgagggcaagtcatctcgggacatgcctagttccattatgggagtcttgtgg 280 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1478 tttgcgatcgagggcaagtcatctcgggacatgcctagttccattatgggagtcttgtgg 1537 Query: 281 tatgcgaataactttcggtctgactattatagaaaagaatcctttcattacaacacattc 340 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1538 tatgcgaataactttcggtctgactattatagaaaagaatcctttcattacaacacattc 1597 Query: 341 attataactaattcttctctttctttcacctcagcagaggtgaggagataattatcgtgt 400 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1598 attataactaattcttctctttctttcacctcagcagaggtgaggagataattatcgtgt 1657 Query: 401 acttctgcacctagtcatgttccaattgtgatcatacttatatataccacatatttctca 460 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1658 acttctgcacctagtcatgttccaattgtgatcatacttatatataccacatatttctca 1717 Query: 461 ggtatggaggataaagcgaaccataactatctttacgagatgaaaacagttgcctaacgt 520 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1718 ggtatggaggataaagcgaaccataactatctttacgagatgaaaacagttgcctaacg- 1776 Query: 521 ttgatttcatatgaaaatttataaactaacaaaccccaagatctactcttgattcgataa 580 ||||||||||||||||||| |||||||||||| |||||||||||||| |||||||| Sbjct: 1777 ttgatttcatatgaaaattataaaactaacaaacaccaagatctactctgatttcgataa 1836 Query: 581 ttatggttttcgctttgtacccgttaccgcgtcatgtattgtatttgtatttaccg-aac 639 ||||||||||||||||||||| | || ||||||||||| ||||||||||| |||| | | Sbjct: 1837 ttatggttttcgctttgtaccgttaacagcgtcatgtatagtatttgtattcaccgtagc 1896 Query: 640 ttttttgtaccttttccttttctttcctgactgaaatgaa 679 ||| |||||||||| || | ||| |||||||||||||| Sbjct: 1897 tttcttgtacctttcgctatgcttcgctgactgaaatgaa 1936 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,807 Number of Sequences: 1807 Number of extensions: 13807 Number of successful extensions: 107 Number of sequences better than 1.0e-20: 1 length of query: 890 length of database: 10,358,551 effective HSP length: 16 effective length of query: 874 effective length of database: 10,329,639 effective search space: 9028104486 effective search space used: 9028104486 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)