BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC27ZF09RM1.SCF screened BAC_end
         (890 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig521                                                         1070   0.0  

>3x_Contig521 
          Length = 2327

 Score = 1070 bits (540), Expect = 0.0
 Identities = 617/640 (96%), Gaps = 2/640 (0%)
 Strand = Plus / Plus

                                                                        
Query: 41   gcttgttcgtcactttaataataatagtaacagcatgagcagtagccactgctattacta 100
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1298 gcttgttcgtcactttaataataatagtaacagcatgagcagtagccactgctattacta 1357

                                                                        
Query: 101  tacctagttttagtgatgattgagatttagcagcaggaagtatggatttgagaagaattc 160
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1358 tacctagttttagtgatgattgagatttagcagcaggaagtatggatttgagaagaattc 1417

                                                                        
Query: 161  ttatcataatgtttcgtggttttggggttcgcttcttttcttttgaatgatgttttataa 220
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1418 ttatcataatgtttcgtggttttggggttcgcttcttttcttttgaatgatgttttataa 1477

                                                                        
Query: 221  tttgcgatcgagggcaagtcatctcgggacatgcctagttccattatgggagtcttgtgg 280
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1478 tttgcgatcgagggcaagtcatctcgggacatgcctagttccattatgggagtcttgtgg 1537

                                                                        
Query: 281  tatgcgaataactttcggtctgactattatagaaaagaatcctttcattacaacacattc 340
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1538 tatgcgaataactttcggtctgactattatagaaaagaatcctttcattacaacacattc 1597

                                                                        
Query: 341  attataactaattcttctctttctttcacctcagcagaggtgaggagataattatcgtgt 400
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1598 attataactaattcttctctttctttcacctcagcagaggtgaggagataattatcgtgt 1657

                                                                        
Query: 401  acttctgcacctagtcatgttccaattgtgatcatacttatatataccacatatttctca 460
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1658 acttctgcacctagtcatgttccaattgtgatcatacttatatataccacatatttctca 1717

                                                                        
Query: 461  ggtatggaggataaagcgaaccataactatctttacgagatgaaaacagttgcctaacgt 520
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 1718 ggtatggaggataaagcgaaccataactatctttacgagatgaaaacagttgcctaacg- 1776

                                                                        
Query: 521  ttgatttcatatgaaaatttataaactaacaaaccccaagatctactcttgattcgataa 580
            |||||||||||||||||||   |||||||||||| ||||||||||||||   ||||||||
Sbjct: 1777 ttgatttcatatgaaaattataaaactaacaaacaccaagatctactctgatttcgataa 1836

                                                                        
Query: 581  ttatggttttcgctttgtacccgttaccgcgtcatgtattgtatttgtatttaccg-aac 639
            |||||||||||||||||||||  | || ||||||||||| ||||||||||| |||| | |
Sbjct: 1837 ttatggttttcgctttgtaccgttaacagcgtcatgtatagtatttgtattcaccgtagc 1896

                                                    
Query: 640  ttttttgtaccttttccttttctttcctgactgaaatgaa 679
            ||| ||||||||||  || | |||  ||||||||||||||
Sbjct: 1897 tttcttgtacctttcgctatgcttcgctgactgaaatgaa 1936


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,807
Number of Sequences: 1807
Number of extensions: 13807
Number of successful extensions: 107
Number of sequences better than 1.0e-20: 1
length of query: 890
length of database: 10,358,551
effective HSP length: 16
effective length of query: 874
effective length of database: 10,329,639
effective search space: 9028104486
effective search space used: 9028104486
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)