BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZF10FM1.SCF screened BAC_end
(953 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1774 1082 0.0
>3x_Contig1774
Length = 27771
Score = 1082 bits (546), Expect = 0.0
Identities = 621/642 (96%), Gaps = 3/642 (0%)
Strand = Plus / Plus
Query: 86 taatttgatatagacatagggcttgtcactgataagaataatatattttggtcctgtgtt 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8034 taatttgatatagacatagggcttgtcactgataagaataatatattttggtcctgtgtt 8093
Query: 146 gaaaacagcggaaggttgtatatcgtgttgaaaacgaaattaacagtaatataggagttt 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8094 gaaaacagcggaaggttgtatatcgtgttgaaaacgaaattaacagtaatataggagttt 8153
Query: 206 cggttcgtaagttctacgagaaactaaagagatcagataaatttatacgatgtccaaagc 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8154 cggttcgtaagttctacgagaaactaaagagatcagataaatttatacgatgtccaaagc 8213
Query: 266 atttcttcgtagtgcaaagaatttagtcaatgggtactctcaggctcaggttctcgttag 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8214 atttcttcgtagtgcaaagaatttagtcaatgggtactctcaggctcaggttctcgttag 8273
Query: 326 aagtgccacttctaacgataaggacggtccgtccgttgatcagttggaagagttggctga 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8274 aagtgccacttctaacgataaggacggtccgtccgttgatcagttggaagagttggctga 8333
Query: 386 aaggacatttgataacgtggaatttttcgagatcatggatatgttggacaagagattaaa 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8334 aaggacatttgataacgtggaatttttcgagatcatggatatgttggacaagagattaaa 8393
Query: 446 cgataaaggccggaactggagacatgtcgccaagtcactaacgtgtctagatttcttggt 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8394 cgataaaggccggaactggagacatgtcgccaagtcactaacgtgtctagatttcttggt 8453
Query: 506 gagatgcggatcagagaactgtgtgttctggtgtaaagagaacctttacatttttaagac 565
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 8454 gagatgcggatcagagaactgtgtgttctggtgtaaagagaacctttacattattaagac 8513
Query: 566 gttgcgtgagtttacacacaccgatgagtttacccgagatcgataccggtgatattgtca 625
|||||||||||||||||||||||||||||||| |||||||||||| |||||| |||||||
Sbjct: 8514 gttgcgtgagtttacacacaccgatgagttta-ccgagatcgataacggtgagattgtca 8572
Query: 626 gagtgaaggcgaaatagtttactgcgttattaccggaacaaggagagggtttaggaagaa 685
|||||||||||||| |||| || ||||||||| ||| || |||||||| | |||| |||
Sbjct: 8573 gagtgaaggcgaaagagttgacggcgttatta-cgggacgaggagaggttgaaggaggaa 8631
Query: 686 ccgttgatgaaggtttaggggaaggaaacgttgtggtaggaa 727
| | ||||| ||| ||| ||| ||||||||| ||||||||||
Sbjct: 8632 cggatgatg-aggcttaaggggaggaaacgtggtggtaggaa 8672
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6412
Number of Sequences: 1807
Number of extensions: 6412
Number of successful extensions: 44
Number of sequences better than 1.0e-20: 1
length of query: 953
length of database: 10,358,551
effective HSP length: 16
effective length of query: 937
effective length of database: 10,329,639
effective search space: 9678871743
effective search space used: 9678871743
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)