BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZF11FM1.SCF screened BAC_end
(973 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1486 1279 0.0
>3x_Contig1486
Length = 12131
Score = 1279 bits (645), Expect = 0.0
Identities = 710/725 (97%), Gaps = 5/725 (0%)
Strand = Plus / Minus
Query: 87 tatcttcttctcctgttcagaaacactttgagtacaaatcaatgcactcttgatatctgg 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2959 tatcttcttctcctgttcagaaacactttgagtacaaatcaatgcactcttgatatctgg 2900
Query: 147 gatttgatacaacatcaatattgatcaatcacgtcgttcttgctcaacggtatctgctgt 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2899 gatttgatacaacatcaatattgatcaatcacgtcgttcttgctcaacggtatctgctgt 2840
Query: 207 ggcagtttttatgatttccttttatagtgcataagtaagatcaaatgttttggttgattc 266
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2839 ggcagtttttatgagttccttttatagtgcataagtaagatcaaatgttttggttgattc 2780
Query: 267 aatatataaaatttttttaatatgttaacaataatcctattaaactaatatcaaacgaat 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2779 aatatataaaatttttttaatatgttaacaataatcctattaaactaatatcaaacgaat 2720
Query: 327 tcaacatggcactagtgactgacattaataaaggataactgcgatctgattatagttaca 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2719 tcaacatggcactagtgactgacattaataaaggataactgcgatctgattatagttaca 2660
Query: 387 ctaacatcgaccttcaatacaccgaaagattctagaaaaagtctaaaatgtccggctcta 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2659 ctaacatcgaccttcaatacaccgaaagattctagaaaaagtctaaaatgtccggctcta 2600
Query: 447 aagtaggagctcctatggtacctccaatcaattgcatatacaactaccttcatcatcaga 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2599 aagtaggagctcctatggtacctccaatcaattgcatatacaactaccttcatcatcaga 2540
Query: 507 caacagtaacgttttggttatacgaacaagtacagacacgtataagaggcaagatcagag 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2539 caacagtaacgttttggttatacgaacaagtacagacacgtataagaggcaagatcagag 2480
Query: 567 gctttgatgagttcatgaatgtggtaatagatgacgctttcgaaatagctgtagatccga 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2479 gctttgatgagttcatgaatgtggtaatagatgacgctttcgaaatagctgtagatccga 2420
Query: 627 aaagtggtaaagagagcgatgataaagcagtgtttcttgggagatttatgttgaaaggtg 686
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 2419 aaagtggtaaagagagcgatgataaagcagtgtttcttgggagaattatgttgaaaggtg 2360
Query: 687 attatataacactttgtgtgggcaattgataatgccttact-agaaaatgattataggat 745
|| ||||||||||| ||||| ||||||||||||| |||| |||||||||| |||||||
Sbjct: 2359 ataatataacacttgttgtggcaaattgataatgcc-tactcagaaaatgataataggat 2301
Query: 746 gaaagaaagatgcttagagtgtataagcattggatcggacttttgtcgtgttaattatat 805
||||||||||||||||||||||| ||||||| |||||||| | ||||||| |||||||||
Sbjct: 2300 gaaagaaagatgcttagagtgtagaagcatt-gatcggac-tctgtcgtg-taattatat 2244
Query: 806 aagcc 810
|||||
Sbjct: 2243 aagcc 2239
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7405
Number of Sequences: 1807
Number of extensions: 7405
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 973
length of database: 10,358,551
effective HSP length: 16
effective length of query: 957
effective length of database: 10,329,639
effective search space: 9885464523
effective search space used: 9885464523
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)