BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZF11RM1.SCF screened BAC_end
(949 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1531 1164 0.0
>3x_Contig1531
Length = 8774
Score = 1164 bits (587), Expect = 0.0
Identities = 638/651 (98%), Gaps = 3/651 (0%)
Strand = Plus / Plus
Query: 50 tgtttggttagaagaatatttgaagagattcgacagaactttggttcttgtctctcattc 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3873 tgtttggttagaagaatatttgaagagattcgacagaactttggttcttgtctctcattc 3932
Query: 110 tcaagatttcttgaacggtgtttgtaccaatatgttagatatgagattacaaaagttgat 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3933 tcaagatttcttgaacggtgtttgtaccaatatgttagatatgagattacaaaagttgat 3992
Query: 170 ggcatacggtggtaattacgactcctacgttaagactcgttccgaattggataccaatca 229
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 3993 ggcatacggtggtaattacgactcctacgttaagactcgttccgaattggagaccaatca 4052
Query: 230 aatgaaacaatacaccaaacaacaagaagaaattgctcatatcaagaagttcattgcttc 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4053 aatgaaacaatacaccaaacaacaagaagaaattgctcatatcaagaagttcattgcttc 4112
Query: 290 tgctggtacttatgccaacttagttaagcaagccaagtctagacaaaagattttggacaa 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4113 tgctggtacttatgccaacttagttaagcaagccaagtctagacaaaagattttggacaa 4172
Query: 350 aatggaagcggatggtttgattcaaccagttgctgccgacaaggtcttctccttcagatt 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4173 aatggaagcggatggtttgattcaaccagttgctgccgacaaggtcttctccttcagatt 4232
Query: 410 cccagaggttgaaagattaccacctccagttttggcattcgatgatatttccttctctta 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4233 cccagaggttgaaagattaccacctccagttttggcattcgatgatatttccttctctta 4292
Query: 470 cgatggtaactcagaaaacaacctatacgaacatttagactttggtgttgatatggactc 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4293 cgatggtaactcagaaaacaacctatacgaacatttagactttggtgttgatatggactc 4352
Query: 530 tagaattgctttattcggtccaaatggtgttggtaaatcttacttggttgaagattattg 589
||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||| ||
Sbjct: 4353 tagaattgctttagtcggtccaaatggtgttggtaaatc-tactttgttgaagatta-tg 4410
Query: 590 actggtcaattgaccactcaaagcggtcgtgttttcagacacagtcacgttcaatttggg 649
|||||||||||||||||||||||||||||||||| |||||||||||||| |||| |||||
Sbjct: 4411 actggtcaattgaccactcaaagcggtcgtgtttccagacacagtcacg-tcaaattggg 4469
Query: 650 tgttttcttccaacattcttcagaccatttggacttgaccaagtctgcctt 700
||||| || |||||||||| |||||| |||||||||||||||||||||||
Sbjct: 4470 tgtttactcccaacattctcaagaccaattggacttgaccaagtctgcctt 4520
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8601
Number of Sequences: 1807
Number of extensions: 8601
Number of successful extensions: 72
Number of sequences better than 1.0e-20: 1
length of query: 949
length of database: 10,358,551
effective HSP length: 16
effective length of query: 933
effective length of database: 10,329,639
effective search space: 9637553187
effective search space used: 9637553187
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)