BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZF12FM1.SCF screened BAC_end
(912 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig558 1156 0.0
>3x_Contig558
Length = 2126
Score = 1156 bits (583), Expect = 0.0
Identities = 624/635 (98%), Gaps = 2/635 (0%)
Strand = Plus / Plus
Query: 85 caactagaataagtttcctctgaaaatgaaccgtggtcaaaaaaaaat-attcggctgga 143
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 557 caactagaataagtttcctctgaaaatgaaccgtggtcaaaaaaaaatcattcggctgga 616
Query: 144 aagctgtattgtggccaatttgagcataaaatatgaaccaaatgtccatgtacataactg 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 aagctgtattgtggccaatttgagcataaaatatgaaccaaatgtccatgtacataactg 676
Query: 204 tatactaatcatttatataacataggtacacctacctcatgcgcccaacaagcggagttt 263
|||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 tatactaatcatcaata-aacataggtacacctacctcatgcgcccaacaagcggagttt 735
Query: 264 tatctaaccagactcaaaggccaaagaatagataagtcacgtgtgttacccgaacactga 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 tatctaaccagactcaaaggccaaagaatagataagtcacgtgtgttacccgaacactga 795
Query: 324 acgtgcacaatgacaacactatcgcgtggcctgggaaaattttgaaaatagtgagttttc 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 acgtgcacaatgacaacactatcgcgtggcctgggaaaattttgaaaatagtgagttttc 855
Query: 384 ggaaaaccaagagaattgaaacgactggatcgcaattgtcatcgctattcaatatcctat 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 856 ggaaaaccaagagaattgaaacgactggatcgcaattgtcatcgctattcaatatcctat 915
Query: 444 tggattcttcagctcatatttgcacaagggtaagacaacttctgtggaaatctgttggca 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 916 tggattcttcagctcatatttgcacaagggtaagacaacttctgtggaaatctgttggca 975
Query: 504 agagtctagttcgtgtaaagttcaaggccctttccgttattactaatgagattagcaaga 563
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 976 agagtctagttcgtgtaaagttcaaggccctttccgttattactaaggagattagcaaga 1035
Query: 564 agcgagaagatacaaagatactcaacgatgactgatgttgcggccgacttaggattcgtt 623
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 1036 agcgagaagatacaaagatactcaacgatgactgatgttgcggccgacttaggattcgat 1095
Query: 624 tcaacgatgaagaggaagaagagcaagaaggtagttcccgaagaactgattgctgcttcc 683
|||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1096 ccaacgatgaagaagaagaagagcaagaaggtagttccggaagaactgattgctgcttcc 1155
Query: 684 aacgaaggaacagatgatctttttgctggtttgaa 718
| ||| |||||||||||||||||||||||||||||
Sbjct: 1156 accgagggaacagatgatctttttgctggtttgaa 1190
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9078
Number of Sequences: 1807
Number of extensions: 9078
Number of successful extensions: 109
Number of sequences better than 1.0e-20: 1
length of query: 912
length of database: 10,358,551
effective HSP length: 16
effective length of query: 896
effective length of database: 10,329,639
effective search space: 9255356544
effective search space used: 9255356544
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)