BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZF12RM1.SCF screened BAC_end
(957 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig390 896 0.0
>3x_Contig390
Length = 1860
Score = 896 bits (452), Expect = 0.0
Identities = 487/496 (98%), Gaps = 2/496 (0%)
Strand = Plus / Minus
Query: 44 agctttacgggagcgaatttatctaacactcgtacatgtaccatctcacgagaacagacc 103
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1662 agctttacgggagcgaatttatcgaacactcgtacatgtaccatctcacgagaacagacc 1603
Query: 104 acagacacaatttttcgatttggaacctggtcttactcttagaatctgctggtattcatc 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1602 acagacacaatttttcgatttggaacctggtcttactcttagaatctgctggtattcatc 1543
Query: 164 tttcccaatctatcgaactatctaagctggcattcgttcctcaattgacactatgtgcag 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1542 tttcccaatctatcgaactatctaagctggcattcgttcctcaattgacactatgtgcag 1483
Query: 224 tactaccttatctattgtggaaatcacagacgttcgaaaatttaatgaatgtcctattcg 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1482 tactaccttatctattgtggaaatcacagacgttcgaaaatttaatgaatgtcctattcg 1423
Query: 284 tacaaacatacgcattcgttactttcaataaagtatgcacttctcaatatttcatttggt 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1422 tacaaacatacgcattcgttactttcaataaagtatgcacttctcaatatttcatttggt 1363
Query: 344 atttggtattatccccattttatttcgcaaatacaaccattacatggagaaaaggtgtgg 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1362 atttggtattatccccattttatttcgcaaatacaaccattacatggagaaaaggtgtgg 1303
Query: 404 tctgtatatttttatggatattgtctcaagccgtatggctttcacaagcatatttacttg 463
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 1302 tctgtatatttttatggatattgtctcaagccgtatggctttcacaagcatatctacttg 1243
Query: 464 aattcaaaggccaaaaagtttttttccccaacttatttttttggcaatatagtgtttttt 523
|||||||||||||||| || ||||||||||||||| || ||||||||||||||| |||||
Sbjct: 1242 aattcaaaggccaaaatgtatttttccccaactta-ttctttggcaatatagtg-ttttt 1185
Query: 524 cttcatcaacggctat 539
| ||||||||| ||||
Sbjct: 1184 cctcatcaacgtctat 1169
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9908
Number of Sequences: 1807
Number of extensions: 9908
Number of successful extensions: 130
Number of sequences better than 1.0e-20: 1
length of query: 957
length of database: 10,358,551
effective HSP length: 16
effective length of query: 941
effective length of database: 10,329,639
effective search space: 9720190299
effective search space used: 9720190299
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)