BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZG01RM1.SCF screened BAC_end
(957 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1751 474 e-133
3x_Contig1183 103 6e-22
3x_Contig866 103 6e-22
>3x_Contig1751
Length = 24682
Score = 474 bits (239), Expect = e-133
Identities = 239/239 (100%)
Strand = Plus / Plus
Query: 47 tacaaacttctagatctgatttctacgggttgaacacttatgaatggtgttctggtatct 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24172 tacaaacttctagatctgatttctacgggttgaacacttatgaatggtgttctggtatct 24231
Query: 107 ctgactggacctcttctggttacgataaactagagtcttctttcaagaatggtagcattc 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24232 ctgactggacctcttctggttacgataaactagagtcttctttcaagaatggtagcattc 24291
Query: 167 cagccattttctctgagtttggttgtatcactgctggcgaaagaagtttcgatgaagttt 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24292 cagccattttctctgagtttggttgtatcactgctggcgaaagaagtttcgatgaagttt 24351
Query: 227 ctgaaggtctatacgatggtttgttggatacgttctctggtgggttagtctacgagtac 285
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24352 ctgaaggtctatacgatggtttgttggatacgttctctggtgggttagtctacgagtac 24410
>3x_Contig1183
Length = 3176
Score = 103 bits (52), Expect = 6e-22
Identities = 91/104 (87%)
Strand = Plus / Minus
Query: 417 ttttttattttatttttattttcttttttttttttctttttttttttttttttttttttg 476
|||||| |||||||||| |||| |||||||||||| |||||||||||||||||||||||
Sbjct: 246 tttttttttttatttttttttttttttttttttttttttttttttttttttttttttttt 187
Query: 477 gctttttttctttttcttttgttttttggtttttattttttttt 520
||||||| ||||| |||| |||||| ||||| |||||||||
Sbjct: 186 tttttttttttttttttttttttttttttttttttttttttttt 143
Score = 103 bits (52), Expect = 6e-22
Identities = 91/104 (87%)
Strand = Plus / Minus
Query: 417 ttttttattttatttttattttcttttttttttttctttttttttttttttttttttttg 476
|||||| |||| ||||| |||| |||||||||||| |||||||||||||||||||||||
Sbjct: 210 tttttttttttttttttttttttttttttttttttttttttttttttttttttttttttt 151
Query: 477 gctttttttctttttcttttgttttttggtttttattttttttt 520
||||||| ||||| |||| |||||| |||||||||||||||
Sbjct: 150 ttttttttttttttttttttttttttttttttttattttttttt 107
Score = 103 bits (52), Expect = 6e-22
Identities = 91/104 (87%)
Strand = Plus / Minus
Query: 417 ttttttattttatttttattttcttttttttttttctttttttttttttttttttttttg 476
|||||| |||| |||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct: 133 tttttttttttttttttatttttttttttttttttttttttttttttttttttttttttt 74
Query: 477 gctttttttctttttcttttgttttttggtttttattttttttt 520
||||||| ||||| |||| |||||| ||||| |||||||||
Sbjct: 73 tttttttttttttttttttttttttttttttttttttttttttt 30
Score = 103 bits (52), Expect = 6e-22
Identities = 91/104 (87%)
Strand = Plus / Minus
Query: 417 ttttttattttatttttattttcttttttttttttctttttttttttttttttttttttg 476
||||||||||| ||||| |||| |||||||||||| |||||||||||||||||||||||
Sbjct: 241 ttttttattttttttttttttttttttttttttttttttttttttttttttttttttttt 182
Query: 477 gctttttttctttttcttttgttttttggtttttattttttttt 520
||||||| ||||| |||| |||||| ||||| |||||||||
Sbjct: 181 tttttttttttttttttttttttttttttttttttttttttttt 138
Score = 103 bits (52), Expect = 6e-22
Identities = 91/104 (87%)
Strand = Plus / Minus
Query: 417 ttttttattttatttttattttcttttttttttttctttttttttttttttttttttttg 476
|||||| |||| ||||| |||| |||||||||||| |||||||||||||||||||||||
Sbjct: 560 tttttttttttttttttttttttttttttttttttttttttttttttttttttttttttt 501
Query: 477 gctttttttctttttcttttgttttttggtttttattttttttt 520
||||||| ||||| |||| |||||| |||||| |||||||||
Sbjct: 500 ttttttttttttttttttttttttttttgttttttttttttttt 457
Score = 103 bits (52), Expect = 6e-22
Identities = 91/104 (87%)
Strand = Plus / Minus
Query: 417 ttttttattttatttttattttcttttttttttttctttttttttttttttttttttttg 476
|||||| |||| ||||| |||| |||||||||||| |||||||||||||||||||||||
Sbjct: 532 tttttttttttttttttttttttttttttttttttttttttttttttttttttttttttt 473
Query: 477 gctttttttctttttcttttgttttttggtttttattttttttt 520
| ||||||| ||||| |||| |||||| ||||| |||||||||
Sbjct: 472 gttttttttttttttttttttttttttttttttttttttttttt 429
Score = 103 bits (52), Expect = 6e-22
Identities = 91/104 (87%)
Strand = Plus / Minus
Query: 417 ttttttattttatttttattttcttttttttttttctttttttttttttttttttttttg 476
||||||||||| ||||| |||| |||||||||||| |||||||||||||||||||||||
Sbjct: 122 ttttttattttttttttttttttttttttttttttttttttttttttttttttttttttt 63
Query: 477 gctttttttctttttcttttgttttttggtttttattttttttt 520
||||||| ||||| |||| |||||| ||||| |||||||||
Sbjct: 62 tttttttttttttttttttttttttttttttttttttttttttt 19
Score = 103 bits (52), Expect = 6e-22
Identities = 91/104 (87%)
Strand = Plus / Minus
Query: 417 ttttttattttatttttattttcttttttttttttctttttttttttttttttttttttg 476
|||||| |||| ||||| |||| |||||||||||| |||||||||||||||||||||||
Sbjct: 552 tttttttttttttttttttttttttttttttttttttttttttttttttttttttttttt 493
Query: 477 gctttttttctttttcttttgttttttggtttttattttttttt 520
||||||| ||||| ||||||||||| ||||| |||||||||
Sbjct: 492 ttttttttttttttttttttgttttttttttttttttttttttt 449
Score = 103 bits (52), Expect = 6e-22
Identities = 91/104 (87%)
Strand = Plus / Minus
Query: 417 ttttttattttatttttattttcttttttttttttctttttttttttttttttttttttg 476
|||||| |||| ||||| |||| |||||||||||| ||||||||||||||||||||||||
Sbjct: 531 tttttttttttttttttttttttttttttttttttttttttttttttttttttttttttg 472
Query: 477 gctttttttctttttcttttgttttttggtttttattttttttt 520
||||||| ||||| |||| |||||| ||||| |||||||||
Sbjct: 471 tttttttttttttttttttttttttttttttttttttttttttt 428
>3x_Contig866
Length = 4028
Score = 103 bits (52), Expect = 6e-22
Identities = 91/104 (87%)
Strand = Plus / Minus
Query: 417 ttttttattttatttttattttcttttttttttttctttttttttttttttttttttttg 476
|||||| |||| ||||| |||| |||||||||||| |||||||||||||||||||||||
Sbjct: 286 tttttttttttttttttttttttttttttttttttttttttttttttttttttttttttt 227
Query: 477 gctttttttctttttcttttgttttttggtttttattttttttt 520
||||||| ||||| ||||||||||| ||||| |||||||||
Sbjct: 226 ttttttttttttttttttttgttttttttttttttttttttttt 183
Score = 103 bits (52), Expect = 6e-22
Identities = 91/104 (87%)
Strand = Plus / Minus
Query: 417 ttttttattttatttttattttcttttttttttttctttttttttttttttttttttttg 476
|||||| |||| ||||| |||| |||||||||||| |||||||||||||||||||||||
Sbjct: 266 tttttttttttttttttttttttttttttttttttttttttttttttttttttttttttt 207
Query: 477 gctttttttctttttcttttgttttttggtttttattttttttt 520
| ||||||| ||||| |||| |||||| ||||| |||||||||
Sbjct: 206 gttttttttttttttttttttttttttttttttttttttttttt 163
Score = 103 bits (52), Expect = 6e-22
Identities = 91/104 (87%)
Strand = Plus / Minus
Query: 417 ttttttattttatttttattttcttttttttttttctttttttttttttttttttttttg 476
|||||| |||| ||||| |||| |||||||||||| ||||||||||||||||||||||||
Sbjct: 265 tttttttttttttttttttttttttttttttttttttttttttttttttttttttttttg 206
Query: 477 gctttttttctttttcttttgttttttggtttttattttttttt 520
||||||| ||||| |||| |||||| ||||| |||||||||
Sbjct: 205 tttttttttttttttttttttttttttttttttttttttttttt 162
Score = 103 bits (52), Expect = 6e-22
Identities = 91/104 (87%)
Strand = Plus / Minus
Query: 417 ttttttattttatttttattttcttttttttttttctttttttttttttttttttttttg 476
|||||| |||| ||||| |||| |||||||||||| |||||||||||||||||||||||
Sbjct: 294 tttttttttttttttttttttttttttttttttttttttttttttttttttttttttttt 235
Query: 477 gctttttttctttttcttttgttttttggtttttattttttttt 520
||||||| ||||| |||| |||||| |||||| |||||||||
Sbjct: 234 ttttttttttttttttttttttttttttgttttttttttttttt 191
Score = 103 bits (52), Expect = 6e-22
Identities = 91/104 (87%)
Strand = Plus / Minus
Query: 417 ttttttattttatttttattttcttttttttttttctttttttttttttttttttttttg 476
|||||| |||| ||||| |||| |||||||||||| |||||||||||||||||||||||
Sbjct: 293 tttttttttttttttttttttttttttttttttttttttttttttttttttttttttttt 234
Query: 477 gctttttttctttttcttttgttttttggtttttattttttttt 520
||||||| ||||| |||| ||||||| ||||| |||||||||
Sbjct: 233 tttttttttttttttttttttttttttgtttttttttttttttt 190
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 60,817
Number of Sequences: 1807
Number of extensions: 60817
Number of successful extensions: 11311
Number of sequences better than 1.0e-20: 3
length of query: 957
length of database: 10,358,551
effective HSP length: 16
effective length of query: 941
effective length of database: 10,329,639
effective search space: 9720190299
effective search space used: 9720190299
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)