BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZG02RM1.SCF screened BAC_end
(925 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1546 1429 0.0
>3x_Contig1546
Length = 12922
Score = 1429 bits (721), Expect = 0.0
Identities = 739/745 (99%)
Strand = Plus / Plus
Query: 48 agacacgttgctgatagtaaggtatctatttcaaaggtggatatcccatccaactcttga 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3959 agacacgttgctgatagtaaggtatctatttcaaaggtggatatcccatccaactcttga 4018
Query: 108 gttccttgcatttttggtggttatttgcttgtatgaacaaagtaaagaatcattttaatg 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4019 gttccttgcatttttggtggttatttgcttgtatgaacaaagtaaagaatcattttaatg 4078
Query: 168 agtgttttatgacgacctatatttctcgcttctcgcattttactactatttttgggctcc 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4079 agtgttttatgacgacctatatttctcgcttctcgcattttactactatttttgggctcc 4138
Query: 228 tgcggaaaggaagccattttccattacttttgtttccattttatatgtattataatttct 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4139 tgcggaaaggaagccattttccattacttttgtttccattttatatgtattataatttct 4198
Query: 288 ataataatacttgaggtgatcagtatactaatatttcaatctacaaaaagtccattaagc 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4199 ataataatacttgaggtgatcagtatactaatatttcaatctacaaaaagtccattaagc 4258
Query: 348 actcaagtgtgaaacacaagtgtgaaatacaaatgtttcaatacaaatcctccattttaa 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4259 actcaagtgtgaaacacaagtgtgaaatacaaatgtttcaatacaaatcctccattttaa 4318
Query: 408 tttcaagatctttcgatgatcttttattatttaattcatgcgattcctcttcctctattt 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4319 tttcaagatctttcgatgatcttttattatttaattcatgcgattcctcttcctctattt 4378
Query: 468 ctgttggatagtactcagaaaaatcatagaatggtctcccccaaaatgcaagtattcctt 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4379 ctgttggatagtactcagaaaaatcatagaatggtctcccccaaaatgcaagtattcctt 4438
Query: 528 tcatgtaaccgttatccttaacataaacaactttacatttttcatcagggcctaataagt 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4439 tcatgtaaccgttatccttaacataaacaactttacatttttcatcagggcctaataagt 4498
Query: 588 catgagtaattgaggacaactgatcaagatctgagtttctcggtagaaacaaaactacat 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4499 catgagtaattgaggacaactgatcaagatctgagtttctcggtagaaacaaaactacat 4558
Query: 648 tctgacttacagagaaaaaaacgctaagtatctttgataatggcgacggctgtaaatgtt 707
|||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4559 tctgacatacagagaagaaaacgctaagtatctttgataatggcgacggctgtaaatgtt 4618
Query: 708 cttcgaggtcataagtgttctgtctcaaatagtcaacaccacccaacggaggtgaagcat 767
|||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct: 4619 cttcgaggtcataagtgtcctgtctcaaatagtcaacaccaccccacggaggtgaagcaa 4678
Query: 768 atatgcattcgggtgtttttcccaa 792
||||||| |||||||||||||||||
Sbjct: 4679 atatgcaatcgggtgtttttcccaa 4703
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7904
Number of Sequences: 1807
Number of extensions: 7904
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 925
length of database: 10,358,551
effective HSP length: 16
effective length of query: 909
effective length of database: 10,329,639
effective search space: 9389641851
effective search space used: 9389641851
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)