BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZG03FM1.SCF screened BAC_end
(949 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1786 1126 0.0
>3x_Contig1786
Length = 33838
Score = 1126 bits (568), Expect = 0.0
Identities = 637/651 (97%), Gaps = 8/651 (1%)
Strand = Plus / Minus
Query: 86 taaatttggtccatagaaaatcaaacaaatctaagataatcttttttaatcatcatgtat 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24298 taaatttggtccatagaaaatcaaacaaatctaagataatcttttttaatcatcatgtat 24239
Query: 146 tatcaatatttagtctccattttcataatactaactttgtaggttcttgtcctttttacg 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24238 tatcaatatttagtctccattttcataatactaactttgtaggttcttgtcctttttacg 24179
Query: 206 tgatgttacattttggatgctgtataattcggatttgggtttattccttttttttttttg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24178 tgatgttacattttggatgctgtataattcggatttgggtttattccttttttttttttg 24119
Query: 266 ttacttcttgtagtactttcttttagctcaaaag-tg-tatataaagag-gttaaggttg 322
|||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||
Sbjct: 24118 ttacttcttgtagtactttcttttagctcaaaagctgctatataaagagcgttaaggttg 24059
Query: 323 actcaagaattttttggaggataatg-attcctagtagttgtgttattggtagaagtttt 381
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 24058 actcaagaattttttggaggataatgcattcctagtagttgtgttattggtagaagtttt 23999
Query: 382 ggttataatttgatacatcaaaacatatcaagcaagctcagaggtatattcaaacattat 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23998 ggttataatttgatacatcaaaacatatcaagcaagctcagaggtatattcaaacattat 23939
Query: 442 actaaaagttctactgctaatacaataaaaattacaaacacaaacacgatttccaacatg 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23938 actaaaagttctactgctaatacaataaaaattacaaacacaaacacgatttccaacatg 23879
Query: 502 agtccagcttccgatagattaaagcaaacttcctcgattctttctaagtccgttgaacct 561
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 23878 agtccagcttccgatagattaaagcaaacttcctcgattctttctaagtccgtggaacct 23819
Query: 562 caagccgatgcacctttcaaggttacagttgtcggttctggtaacttgggtactactatc 621
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 23818 caagccgatgcacctttcaaggttacagttgtcggttctggtaactggggtactactatc 23759
Query: 622 ggcaaggttgttgctgaaaactgtgctttgagacctaacctatttgtcaacaaagttgat 681
| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 23758 gccaaggttgttgctgaaaactgtgctttgagacctaacctatttgtcaacagagttga- 23700
Query: 682 tttgtgggtttttcgaagaaaacattaacgggggaaaaagttgactgaaat 732
| |||||| |||||||||||||||||||||| | ||||||||||||||||
Sbjct: 23699 tatgtggg-ttttcgaagaaaacattaacggtg--aaaagttgactgaaat 23652
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,073
Number of Sequences: 1807
Number of extensions: 14073
Number of successful extensions: 154
Number of sequences better than 1.0e-20: 1
length of query: 949
length of database: 10,358,551
effective HSP length: 16
effective length of query: 933
effective length of database: 10,329,639
effective search space: 9637553187
effective search space used: 9637553187
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)