BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZG03RM1.SCF screened BAC_end
(973 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig560 654 0.0
3x_Contig1144 442 e-124
>3x_Contig560
Length = 2642
Score = 654 bits (330), Expect = 0.0
Identities = 388/402 (96%), Gaps = 4/402 (0%)
Strand = Plus / Plus
Query: 320 attgtatgctagtggatttcatttgtaaattttcagtgttgattattctaatataggtcg 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 attgtatgctagtggatttcatttgtaaattttcagtgttgattattctaatataggtcg 71
Query: 380 aatgaattagatcccggattaagtcattgtcataattagaaagatatcttatagttggaa 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72 aatgaattagatcccggattaagtcattgtcataattagaaagatatcttatagttggaa 131
Query: 440 gtatgcttttccaaattacaattaattgtttttctgtcattaaagatgcactgcattgtc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 gtatgcttttccaaattacaattaattgtttttctgtcattaaagatgcactgcattgtc 191
Query: 500 tgaaacaatcatgtaagtatagcctcaatcttttgagtttaaagtttgtgacatctgctt 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 tgaaacaatcatgtaagtatagcctcaatcttttgagtttaaagtttgtgacatctgctt 251
Query: 560 tccaggtttcattattaaacactgcaagccatacaagatgtgcgctttcccgaag-ttaa 618
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct: 252 tccaggtttcattattaaacacttcaagccatacaagatgtgcgctttcccgaagtttaa 311
Query: 619 cattcggagaatcgaggtatggtcgaaccagatgtcaaattctttctttaagatagcatg 678
||| | ||||||||||||||||||||| ||| || ||||||||||| |||||||||||
Sbjct: 312 catcggaagaatcgaggtatggtcgaacaagaggttcaattctttcttcaagatagcatg 371
Query: 679 cgttaggtattcttcaattctgtccaaatttgagttgcaaat 720
||| ||||| |||||||||||| ||||| |||||||||||||
Sbjct: 372 cgtcaggta-tcttcaattctg-ccaaa-ttgagttgcaaat 410
>3x_Contig1144
Length = 4618
Score = 442 bits (223), Expect = e-124
Identities = 226/227 (99%)
Strand = Plus / Minus
Query: 46 gcttcaaatagatattcaattaattacgaccagcctatttaacattagcactaggaatat 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 gcttcaaatagatattcaattaattacgaccagcctatttaacattagcactaggaatat 168
Query: 106 ataagtatagatcaaattcttgataaatttggaactatcctatcataccaccatctaatt 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 ataagtatagatcaaattcttgataaatttggaactatcctatcataccaccatctaatt 108
Query: 166 gctagttcattgtgagaatgtgatatatactcccataatttagtaatgatatgttctttc 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107 gctagttcattgtgagaatgtgatatatactcccataatttagtaatgatatgttctttc 48
Query: 226 attagaggcggaagagttcgggctaattcgttacatgcatctaacca 272
|||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 47 attagaggcggaagagttcgggctaattcggtacatgcatctaacca 1
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8908
Number of Sequences: 1807
Number of extensions: 8908
Number of successful extensions: 78
Number of sequences better than 1.0e-20: 2
length of query: 973
length of database: 10,358,551
effective HSP length: 16
effective length of query: 957
effective length of database: 10,329,639
effective search space: 9885464523
effective search space used: 9885464523
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)