BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZG04RM1.SCF screened BAC_end
(950 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1243 1043 0.0
>3x_Contig1243
Length = 5571
Score = 1043 bits (526), Expect = 0.0
Identities = 542/546 (99%), Gaps = 1/546 (0%)
Strand = Plus / Plus
Query: 121 attgctagttccagttcaggtcccgcgtcctgcgtaacgaaatttggtctcgaggttttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 attgctagttccagttcaggtcccgcgtcctgcgtaacgaaatttggtctcgaggttttt 64
Query: 181 ccggttgatcccctcccccgcttttttttttcacgaaacttctctcaattatcgtcgtca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 ccggttgatcccctcccccgcttttttttttcacgaaacttctctcaattatcgtcgtca 124
Query: 241 tagagaacgtggttttctctccagtaaaggaataaacggggaagctctaaacagagggta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 tagagaacgtggttttctctccagtaaaggaataaacggggaagctctaaacagagggta 184
Query: 301 cattcattcttgtctaacttaagatgcgcaggtctgttgatgggagttgggaatggtact 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 cattcattcttgtctaacttaagatgcgcaggtctgttgatgggagttgggaatggtact 244
Query: 361 cagtaagtagttttgcttagggtaggtacatactgtttataaaaaattttaggttgggtt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 cagtaagtagttttgcttagggtaggtacatactgtttataaaaaattttaggttgggtt 304
Query: 421 aagttcagtccgatagtaatgagtattgttccagtagaatacaatctcctcctctctcag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 aagttcagtccgatagtaatgagtattgttccagtagaatacaatctcctcctctctcag 364
Query: 481 ggtccgaaatgtatttgtacataaaaccctcgcttgacacgaccctaatcggtaccattg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggtccgaaatgtatttgtacataaaaccctcgcttgacacgaccctaatcggtaccattg 424
Query: 541 tcaatgtatctgaattttggtagtcgccattgtttgatgcatttttctcgaataaatcgg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tcaatgtatctgaattttggtagtcgccattgtttgatgcatttttctcgaataaatcgg 484
Query: 601 gatactctttgatgctcaactcattcggatcattgatggcagctatggccctttattggt 660
||||||||||||||||||||||| ||||||||| |||||||||||||| |||||||||||
Sbjct: 485 gatactctttgatgctcaactcaatcggatcatcgatggcagctatgg-cctttattggt 543
Query: 661 ggattc 666
|||||
Sbjct: 544 tgattc 549
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 19,910
Number of Sequences: 1807
Number of extensions: 19910
Number of successful extensions: 207
Number of sequences better than 1.0e-20: 1
length of query: 950
length of database: 10,358,551
effective HSP length: 16
effective length of query: 934
effective length of database: 10,329,639
effective search space: 9647882826
effective search space used: 9647882826
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)