BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZG05RM1.SCF screened BAC_end
(909 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1067 1532 0.0
>3x_Contig1067
Length = 4823
Score = 1532 bits (773), Expect = 0.0
Identities = 814/824 (98%), Gaps = 4/824 (0%)
Strand = Plus / Plus
Query: 50 atgaggaatagctcaataagcaagagacaaatacatctcagttctgtcaagtatccttca 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1342 atgaggaatagctcaataagcaagagacaaatacatctcagttctgtcaagtatccttca 1401
Query: 110 tcagtaagaaataaatatattgcaggttattgaaaatattggctgcagatggtctaatgc 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1402 tcagtaagaaataaatatattgcaggttattgaaaatattggctgcagatggtctaatgc 1461
Query: 170 ttcggaggaaatcatgtttcttcttataagaatttggcgcctatatcgtactcagatggc 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1462 ttcggaggaaatcatgtttcttcttataagaatttggcgcctatatcgtactcagatggc 1521
Query: 230 gtacgcatttagttacatcaaggaaataattgctcttgtttttgtccttgagtagattag 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1522 gtacgcatttagttacatcaaggaaataattgctcttgtttttgtccttgagtagattag 1581
Query: 290 ctttttctctatcagtagtgggaattagcattatgcttctaccacgatttttttatcctt 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1582 ctttttctctatcagtagtgggaattagcattatgcttctaccacgatttttttatcctt 1641
Query: 350 tttccgtcactaggaaccaaggcaccttacgaaagagttacgtcaactaacattaagaag 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1642 tttccgtcactaggaaccaaggcaccttacgaaagagttacgtcaactaacattaagaag 1701
Query: 410 aaaacagataaaagggtttctgtctatcaagttgaatatcttcgaacgaagacctatgta 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1702 aaaacagataaaagggtttctgtctatcaagttgaatatcttcgaacgaagacctatgta 1761
Query: 470 aggacaacagggtatttttcgggcaggtttcttcatttttttgctaaataacactgccaa 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1762 aggacaacagggtatttttcgggcaggtttcttcatttttttgctaaataacactgccaa 1821
Query: 530 gactagcatcaagtcacagttgttgtacttgtgatgaagattggcccttttcaaataagt 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1822 gactagcatcaagtcacagttgttgtacttgtgatgaagattggcccttttcaaataagt 1881
Query: 590 ttcctgcttcaattacttggcttgaacaatcaacctttttgtcttgcccagaaaatgaaa 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1882 ttcctgcttcaattacttggcttgaacaatcaacctttttgtcttgcccagaaaatgaaa 1941
Query: 650 caaccaagtgaagtttttcaacttggcagcttgcatatacattctgttggcagcaattag 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1942 caaccaagtgaagtttttcaacttggcagcttgcatatacattctgttggcagcaattag 2001
Query: 710 gctcaaatattcaggatttgcaacttctgtcattaaagacgtttgattctaaaaacttat 769
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2002 gctcaaatatccaggatttgcaacttctgtcattaaagacgtttgattctaaaaacttat 2061
Query: 770 aatacatctcttttccggattaagctctttttcttactttttttcccatatgattatttt 829
|||||||||||||| |||||||||||||||| ||||||||||| | ||||||||||||||
Sbjct: 2062 aatacatctctttt-cggattaagctcttttccttacttttttccacatatgattatttt 2120
Query: 830 catttttttaaatttttttttttggaaccg-aatattcgaactt 872
|||||||| ||||||||||||| ||| || |||||||||||||
Sbjct: 2121 catttttt--aattttttttttttgaatcgaaatattcgaactt 2162
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,650
Number of Sequences: 1807
Number of extensions: 13650
Number of successful extensions: 132
Number of sequences better than 1.0e-20: 1
length of query: 909
length of database: 10,358,551
effective HSP length: 16
effective length of query: 893
effective length of database: 10,329,639
effective search space: 9224367627
effective search space used: 9224367627
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)