BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZG06FM1.SCF screened BAC_end
(927 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig254 1181 0.0
>3x_Contig254
Length = 2235
Score = 1181 bits (596), Expect = 0.0
Identities = 663/680 (97%), Gaps = 4/680 (0%)
Strand = Plus / Plus
Query: 164 gtagaatcattgtggcaactcctggtagatttttggaattattagaaaggaacccagatc 223
|||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct: 26 gtagaatcattgtg-caactcctggtagatttttgga-ttattagaaag-aacccagatc 82
Query: 224 tgattcctaggtttgccaaaattgacactttagttcttgatgaggcagacagactactac 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83 tgattcctaggtttgccaaaattgacactttagttcttgatgaggcagacagactactac 142
Query: 284 aagacggacatttcgatgaattcgagaaaattttgaagttattagggaaagcccgaaaaa 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 143 aagacggacatttcgatgaattcgagaaaattttgaagttattagggaaagcccggaaaa 202
Query: 344 ttaaaacaagtatcgacggaaagccaactggaagtggatggcaaacaatgattttctctg 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ttaaaacaagtatcgacggaaagccaactggaagtggatggcaaacaatgattttctctg 262
Query: 404 ccacattttcattggatcttttcacgaaattagataaaacttcatggaaaatccttaaaa 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ccacattttcattggatcttttcacgaaattagataaaacttcatggaaaatccttaaaa 322
Query: 464 cagccggtggggagaacaatgaaatggaacaagttttaaatcatttgatgaagaaaattc 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 cagccggtggggagaacaatgaaatggaacaagttttaaatcatttgatgaagaaaattc 382
Query: 524 aattcaaatctaagccagttattatcgatactaatcctgaacataaagttacatctcagg 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 aattcaaatctaagccagttattatcgatactaatcctgaacataaagttacatctcagg 442
Query: 584 tcaaagaatccctgatagaatgtttgccaatggagcgtgacttatatgtctactacttta 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tcaaagaatccctgatagaatgtttgccaatggagcgtgacttatatgtctactacttta 502
Query: 644 tcatgatgtatcctggcacaactttagtattttgtaacgctatagatagcgtccaaaagt 703
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 503 tcatgatgtatcctggcacaactttagtattttgtaacgctatagatagcgtcaaaaagt 562
Query: 704 tgaatgcatttttaaacaatctaaagatttcgtcatttcagattcattcatcaatggctc 763
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 563 tgaatgcatttttaaacaatctaaagatttcgtcattccagatccattcatcaatggctc 622
Query: 764 aaaaaaatcgttttagaacccttggaaagttcaaagaacaatcagaaaaaaattgccagg 823
||||||||||| |||| | ||||| ||||||||||||||||||||| |||||| || |||
Sbjct: 623 aaaaaaatcgtcttaggaaccttgaaaagttcaaagaacaatcagagaaaaatagcaagg 682
Query: 824 ttagggaaaccaaccatttt 843
|||| |||||||| |||||
Sbjct: 683 -taggaaaaccaacaatttt 701
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7920
Number of Sequences: 1807
Number of extensions: 7920
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 927
length of database: 10,358,551
effective HSP length: 16
effective length of query: 911
effective length of database: 10,329,639
effective search space: 9410301129
effective search space used: 9410301129
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)