BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZG06RM1.SCF screened BAC_end
(937 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1136 1320 0.0
>3x_Contig1136
Length = 5035
Score = 1320 bits (666), Expect = 0.0
Identities = 712/722 (98%), Gaps = 4/722 (0%)
Strand = Plus / Minus
Query: 48 ttaatgcttcctgtactaaaagagtgaaaaacttactggaccatacgacttgttcagaac 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1763 ttaatgcttcctgtactaaaagagtgaaaaacttactggaccatacgacttgttcagaac 1704
Query: 108 attttacaacaacggcattaccagtgaatatcgaagcaactataggccctaataagttgt 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1703 attttacaacaacggcattaccagtgaatatcgaagcaactataggccctaataagttgt 1644
Query: 168 ggaaaggataattccaagaaacaatcgccccaacaacacccaatggctcgtaacggacct 227
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1643 ggaaaggataattccaagagacaatcgccccaacaacacccaatggctcgtaacggacct 1584
Query: 228 ctgcacctttgtaccatttcatgaagaagttagtgggtccagggcgggc-gcttggcttc 286
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1583 ctgcacctttgtaccatttcatgaagaagttagtgggtccagggcgggccgcttggcttc 1524
Query: 287 aaaacatcttctccatgttcaataatccactgaatcttttctaatgtaaccagaatctca 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1523 aaaacatcttctccatgttcaataatccactgaatcttttctaatgtaaccagaatctca 1464
Query: 347 cccattgaagcatctaacatggttttccctgagtccctacatgcgacgcgagcaatggct 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1463 cccattgaagcatctaacatggttttccctgagtccctacatgcgacgcgagcaatggct 1404
Query: 407 tcttgattctccaagatgaaatttttcaaagataatagaacttgcagcctttcctttaat 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1403 tcttgattctccaagatgaaatttttcaaagataatagaacttgcagcctttcctttaat 1344
Query: 467 gaagtcttggcccattgtaattgtgctctttctgccaatagaacgatttcatcgatatca 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1343 gaagtcttggcccattgtaattgtgctctttctgccaatagaacgatttcatcgatatca 1284
Query: 527 gtatcagacatagacttaaatgaacctaggaattggcctgtcgctggacaataagattgg 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1283 gtatcagacatagacttaaatgaacctaggaattggcctgtcgctggacaataagattgg 1224
Query: 587 atcatatggggttgctctgggttataaacagagcaaggaaacattcgcttacccttccaa 646
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1223 atcatatggggttgctctgggttataaacagagcaaggaaacatccgcttacccttccaa 1164
Query: 647 tgtttgtgagctgcatcagggatatatagtttgaactggaccgcagatggcagtttgctc 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1163 tgtttgtgagctgcatcagggatatatagtttgaactggaccgcagatggcagtttgctc 1104
Query: 707 ttactgaacacccattggataaattgaataaattcgagaattaaaccaacaaccaaagtt 766
|||||||||||||||| ||||||| |||||| ||||| |||||||||||||| | ||||
Sbjct: 1103 ttactgaacacccatt-gataaatgaaataaa-tcgag-attaaaccaacaacgagagtt 1047
Query: 767 cc 768
||
Sbjct: 1046 cc 1045
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7607
Number of Sequences: 1807
Number of extensions: 7607
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 937
length of database: 10,358,551
effective HSP length: 16
effective length of query: 921
effective length of database: 10,329,639
effective search space: 9513597519
effective search space used: 9513597519
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)