BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZG07FM1.SCF screened BAC_end
(948 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1263 274 3e-73
>3x_Contig1263
Length = 6840
Score = 274 bits (138), Expect = 3e-73
Identities = 147/149 (98%), Gaps = 2/149 (1%)
Strand = Plus / Minus
Query: 86 ctatatctaaagtaactgagaagtctgcatttcagattattaagtcatatgtgaaatatc 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2870 ctatatctaaagtaactgagaagtctgcatttcagattattaagtcatatgtgaaatatc 2811
Query: 146 ctagaagccaaattgatttaatatacgataatttgaanntcaaataaaatccaagacgaa 205
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 2810 ctagaagccaaattgatttaatatacgataatttgaa--tcaaataaaatccaagacgaa 2753
Query: 206 ctgtaatgtggttattctaaacttacaaa 234
|||||||||||||||||||||||||||||
Sbjct: 2752 ctgtaatgtggttattctaaacttacaaa 2724
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,591
Number of Sequences: 1807
Number of extensions: 12591
Number of successful extensions: 235
Number of sequences better than 1.0e-20: 1
length of query: 948
length of database: 10,358,551
effective HSP length: 16
effective length of query: 932
effective length of database: 10,329,639
effective search space: 9627223548
effective search space used: 9627223548
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)