BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC27ZG08RM1.SCF screened BAC_end (954 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig684 1265 0.0 >3x_Contig684 Length = 2183 Score = 1265 bits (638), Expect = 0.0 Identities = 702/721 (97%), Gaps = 3/721 (0%) Strand = Plus / Minus Query: 59 gttcctgaatttattttcaaagctgacatcaaaattcaaaccaatgacgatgaaccagat 118 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 1821 gttcctgaatttattccaaaagctgacatcaaaattcaaaccaatgacgatgaaccagat 1762 Query: 119 ccaaacgcgaacaaccagcttggtggcgatgtcttagaaaacttggcagcttctttgcca 178 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1761 ccaaacgcgaacaaccagcttggtggcgatgtcttagaaaacttggcagcttctttgcca 1702 Query: 179 gatgcttctaccttagctggtttccaactaatcccagttgaatttgtttaggatgacgat 238 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 1701 gatgcttctaccttagctggtttccaactaatcccagttgaatttgaaaaggatgacgat 1642 Query: 239 acaaaccatcatattgagttcattactgctgcatcgaacaaccgtgctctaaactactct 298 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1641 acaaaccatcatattgagttcattactgctgcatcgaacaaccgtgctctaaactactct 1582 Query: 299 atcgaaccagctgatcgtcaaaagactaagttcattgctggccgtatcattcctgccatc 358 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1581 atcgaaccagctgatcgtcaaaagactaagttcattgctggccgtatcattcctgccatc 1522 Query: 359 gctacaaccactgctttggttacaggattggtcaacctagaactatacaaagtcgtcgct 418 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1521 gctacaaccactgctttggttacaggattggtcaacctagaactatacaaagtcgtcgct 1462 Query: 419 ggaaagacagatattgaacaatacaagaacgggtttgtgaatttagctcttccatttttc 478 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1461 ggaaagacagatattgaacaatacaagaacgggtttgtgaatttagctcttccatttttc 1402 Query: 479 ggtttctcagaaccaatcgcatcacaaaagggtaaatacaatgataagactttcgataaa 538 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1401 ggtttctcagaaccaatcgcatcacaaaagggtaaatacaatgataagactttcgataaa 1342 Query: 539 atatgggatagattcgatattcaaggtgatatcacattaagagagttgattgatcacttc 598 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1341 atatgggatagattcgatattcaaggtgatatcacattaagagagttgattgatcacttc 1282 Query: 599 aacaaggaagaaagattggaaattacaatggtctcctacgatgtttctttactatacgca 658 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1281 aacaaggaagaaggattggaaattacaatggtctcctacgatgtttctttactatacgca 1222 Query: 659 tcattcttccctcc-aaaaaacttaaggatagaatggatcttccaataactgaggtttgt 717 |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| Sbjct: 1221 tcattcttccctccaaaaaaactaaaggatagaatggatcttccaataactgaggttgta 1162 Query: 718 aaattagtcacgaaaaaaggaatccttagtcacgttaagaccatggaattttgaaattct 777 |||||||||||||| || | |||||| |||||||||||||||||| |||||| |||||| Sbjct: 1161 aaattagtcacgaagaaggaaatcctcagtcacgttaagaccatg--attttggaattct 1104 Query: 778 g 778 | Sbjct: 1103 g 1103 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7599 Number of Sequences: 1807 Number of extensions: 7599 Number of successful extensions: 52 Number of sequences better than 1.0e-20: 1 length of query: 954 length of database: 10,358,551 effective HSP length: 16 effective length of query: 938 effective length of database: 10,329,639 effective search space: 9689201382 effective search space used: 9689201382 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)