BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZG08RM1.SCF screened BAC_end
(954 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig684 1265 0.0
>3x_Contig684
Length = 2183
Score = 1265 bits (638), Expect = 0.0
Identities = 702/721 (97%), Gaps = 3/721 (0%)
Strand = Plus / Minus
Query: 59 gttcctgaatttattttcaaagctgacatcaaaattcaaaccaatgacgatgaaccagat 118
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1821 gttcctgaatttattccaaaagctgacatcaaaattcaaaccaatgacgatgaaccagat 1762
Query: 119 ccaaacgcgaacaaccagcttggtggcgatgtcttagaaaacttggcagcttctttgcca 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1761 ccaaacgcgaacaaccagcttggtggcgatgtcttagaaaacttggcagcttctttgcca 1702
Query: 179 gatgcttctaccttagctggtttccaactaatcccagttgaatttgtttaggatgacgat 238
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 1701 gatgcttctaccttagctggtttccaactaatcccagttgaatttgaaaaggatgacgat 1642
Query: 239 acaaaccatcatattgagttcattactgctgcatcgaacaaccgtgctctaaactactct 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1641 acaaaccatcatattgagttcattactgctgcatcgaacaaccgtgctctaaactactct 1582
Query: 299 atcgaaccagctgatcgtcaaaagactaagttcattgctggccgtatcattcctgccatc 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1581 atcgaaccagctgatcgtcaaaagactaagttcattgctggccgtatcattcctgccatc 1522
Query: 359 gctacaaccactgctttggttacaggattggtcaacctagaactatacaaagtcgtcgct 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1521 gctacaaccactgctttggttacaggattggtcaacctagaactatacaaagtcgtcgct 1462
Query: 419 ggaaagacagatattgaacaatacaagaacgggtttgtgaatttagctcttccatttttc 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1461 ggaaagacagatattgaacaatacaagaacgggtttgtgaatttagctcttccatttttc 1402
Query: 479 ggtttctcagaaccaatcgcatcacaaaagggtaaatacaatgataagactttcgataaa 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1401 ggtttctcagaaccaatcgcatcacaaaagggtaaatacaatgataagactttcgataaa 1342
Query: 539 atatgggatagattcgatattcaaggtgatatcacattaagagagttgattgatcacttc 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1341 atatgggatagattcgatattcaaggtgatatcacattaagagagttgattgatcacttc 1282
Query: 599 aacaaggaagaaagattggaaattacaatggtctcctacgatgtttctttactatacgca 658
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1281 aacaaggaagaaggattggaaattacaatggtctcctacgatgtttctttactatacgca 1222
Query: 659 tcattcttccctcc-aaaaaacttaaggatagaatggatcttccaataactgaggtttgt 717
|||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1221 tcattcttccctccaaaaaaactaaaggatagaatggatcttccaataactgaggttgta 1162
Query: 718 aaattagtcacgaaaaaaggaatccttagtcacgttaagaccatggaattttgaaattct 777
|||||||||||||| || | |||||| |||||||||||||||||| |||||| ||||||
Sbjct: 1161 aaattagtcacgaagaaggaaatcctcagtcacgttaagaccatg--attttggaattct 1104
Query: 778 g 778
|
Sbjct: 1103 g 1103
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7599
Number of Sequences: 1807
Number of extensions: 7599
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 954
length of database: 10,358,551
effective HSP length: 16
effective length of query: 938
effective length of database: 10,329,639
effective search space: 9689201382
effective search space used: 9689201382
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)