BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZG09FM1.SCF screened BAC_end
(920 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1288 1348 0.0
>3x_Contig1288
Length = 8015
Score = 1348 bits (680), Expect = 0.0
Identities = 748/764 (97%), Gaps = 5/764 (0%)
Strand = Plus / Minus
Query: 86 tagctttagatttcgcaacagcgaagagctcggcagcattttcgaagtcactttcatcct 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2420 tagctttagatttcgcaacagcgaagagctcggcagcattttcgaagtcactttcatcct 2361
Query: 146 cgctactgctatcctctttcttcggttgcaatgttggtcttgtattgaaaacttgacttt 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2360 cgctactgctatcctctttcttcggttgcaatgttggtcttgtattgaaaacttgacttt 2301
Query: 206 gagcaggatgaattacacgcttttcaataagctttttcctttccagttcaaatctagata 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2300 gagcaggatgaattacacgcttttcaataagctttttcctttccagttcaaatctagata 2241
Query: 266 agggcttgggagcaggcgcactaacagttggcgtaccacctggtttgaagaaaccatatg 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2240 agggcttgggagcaggcgcactaacagttggcgtaccacctggtttgaagaaaccatatg 2181
Query: 326 atgaaagggttgactgacccttaggacgagaaagaagcgatgaacctatatttgcctttt 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2180 atgaaagggttgactgacccttaggacgagaaagaagcgatgaacctatatttgcctttt 2121
Query: 386 tcaacattgaatcagcacgctggccagaagtcatggatggtttattcggttgctgctgaa 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2120 tcaacattgaatcagcacgctggccagaagtcatggatggtttattcggttgctgctgaa 2061
Query: 446 cagtagagatggtagcttttgattcctgtaaggatccagaaggtttagtaccctttttca 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2060 cagtagagatggtagcttttgattcctgtaaggatccagaaggtttagtaccctttttca 2001
Query: 506 gtaatgctttttctaagtgatacttttcagattctttaacaacttcgtttgtcaaggctt 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2000 gtaatgctttttctaagtgatacttttcagattctttaacaacttcgtttgtcaaggctt 1941
Query: 566 tgttgaagtaacgggatctttcaagaagctcttggctctgagccgctgaaagtttgttgg 625
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 1940 tgttgaagtaacgggatctttcaagaagctcttggctctgagccgctgaaagtttgtttg 1881
Query: 626 gata-tttcgagcttttgaagcatatcttgccatatccaacactagcatttaatcaaatc 684
|||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1880 gatattttcgagcttttgaagcatatcttgccatatccaacactagcatttcatcaaatc 1821
Query: 685 gaaattgtttcttctttgcaagatcagaagctgatacttttaacatgacacaagaggcaa 744
|||||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1820 gaaattgtttctccttcgcaagatcagaagctgatactattaacatgacacaagaggcaa 1761
Query: 745 gaagctgttcatcattc-accttcaccagtaaa-catatttttggatgggctctttgggg 802
||||||||||||||||| |||| ||||||||| |||||||||| |||||||| |||||
Sbjct: 1760 gaagctgttcatcattcaacctcaaccagtaaagcatatttttgaatgggctcattggga 1701
Query: 803 atttgaaaagatc-ttttcagttatattttcccttgactaaaac 845
||||||||||||| | |||||||||| |||||||||||||||||
Sbjct: 1700 atttgaaaagatcatcttcagttata-tttcccttgactaaaac 1658
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7286
Number of Sequences: 1807
Number of extensions: 7286
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 920
length of database: 10,358,551
effective HSP length: 16
effective length of query: 904
effective length of database: 10,329,639
effective search space: 9337993656
effective search space used: 9337993656
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)