BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZG09RM1.SCF screened BAC_end
(936 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1278 1330 0.0
>3x_Contig1278
Length = 6932
Score = 1330 bits (671), Expect = 0.0
Identities = 726/739 (98%), Gaps = 4/739 (0%)
Strand = Plus / Plus
Query: 46 gcttattaccaatgtgcgatgagatt-aaatgctagacaaattc-cacagctatgagaca 103
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 4791 gcttattaccaatgtgcgatgagattcaaatgctagacaaattcacacagctatgagaca 4850
Query: 104 acttaagttcgccaccgtatgacatgatctcgaagaccgaaaactagaaaattaattcac 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4851 acttaagttcgccaccgtatgacatgatctcgaagaccgaaaactagaaaattaattcac 4910
Query: 164 tatggggaagtttggactaccttaaactttattcattaaaatcttaggaaatttttcatg 223
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct: 4911 tatggggaagtttggactaccttaaactttattcattaaaatcttaggaaatcgttcagg 4970
Query: 224 actaatcttctaaagtagtatggtattgttttaattatagctttttcagtatatctgaaa 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4971 actaatcttctaaagtagtatggtattgttttaattatagctttttcagtatatctgaaa 5030
Query: 284 tagtaaatattaatgaagatgcatatatagacgaattgaaaaaaggtactaacgacgtgg 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5031 tagtaaatattaatgaagatgcatatatagacgaattgaaaaaaggtactaacgacgtgg 5090
Query: 344 ggatatgaaagcattaggaatgaacgttaataatcgtggtattgtaaagtgatgaaggaa 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5091 ggatatgaaagcattaggaatgaacgttaataatcgtggtattgtaaagtgatgaaggaa 5150
Query: 404 ctgaaacaatgaagtttgcattatttttcggtttgaagagaaatcttcaagctgcaaatg 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5151 ctgaaacaatgaagtttgcattatttttcggtttgaagagaaatcttcaagctgcaaatg 5210
Query: 464 tgaaagtaaatactcaaaagatggattcttttatagtatctgttaacctattacaacaat 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5211 tgaaagtaaatactcaaaagatggattcttttatagtatctgttaacctattacaacaat 5270
Query: 524 agagcagcgatggcggcgataccagcaccggcaccgaaggtgaccttgccagcgttgttg 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5271 agagcagcgatggcggcgataccagcaccggcaccgaaggtgaccttgccagcgttgttg 5330
Query: 584 ccggattcagtcttgatccagacggattgagtaccagtggtagcttgaatttggccatca 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5331 ccggattcagtcttgatccagacggattgagtaccagtggtagcttgaatttggccatca 5390
Query: 644 ccgatttgagagactggggcaacagtttggacgacgttagaat-ctttgatgtggtttct 702
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 5391 ccgatttgagagactggggcaacagtttggacgacgttagaatcctttgatgtggtttct 5450
Query: 703 ggagcaatggtagttggtttctggggcagcttgagaagtttttggggcagctgaggaaag 762
||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||
Sbjct: 5451 ggagcaatggtag-tggtttctggggcagctgaggaagtttctggggcagctgaggaagt 5509
Query: 763 ttcagaactactttctgga 781
|||||||||||||||||||
Sbjct: 5510 ttcagaactactttctgga 5528
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7386
Number of Sequences: 1807
Number of extensions: 7386
Number of successful extensions: 74
Number of sequences better than 1.0e-20: 1
length of query: 936
length of database: 10,358,551
effective HSP length: 16
effective length of query: 920
effective length of database: 10,329,639
effective search space: 9503267880
effective search space used: 9503267880
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)