BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZG10FM1.SCF screened BAC_end
(947 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1017 1116 0.0
3x_Contig905 123 7e-28
>3x_Contig1017
Length = 3431
Score = 1116 bits (563), Expect = 0.0
Identities = 617/631 (97%), Gaps = 3/631 (0%)
Strand = Plus / Plus
Query: 86 cgccaaagagaatgcaacaaatgatgaatatactgtgatgtagtgattgctcattgaata 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1299 cgccaaagagaatgcaacaaatgatgaatatactgtgatgtagtgattgctcattgaata 1358
Query: 146 agtagcgttattcgaagtaaagaatagaaaatcacaagactggggttaaagctgcatcaa 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1359 agtagcgttattcgaagtaaagaatagaaaatcacaagactggggttaaagctgcatcaa 1418
Query: 206 ataggcaaatgtgcggcgtatcatggtttgcgcgcacggattatctaacaagtttttcca 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1419 ataggcaaatgtgcggcgtatcatggtttgcgcgcacggattatctaacaagtttttcca 1478
Query: 266 ccacttaaaaattgagggagcgttccgcataattataattgctttttttgctgacatcgg 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1479 ccacttaaaaattgagggagcgttccgcataattataattgctttttttgctgacatcgg 1538
Query: 326 catcctgacttcttcttttgtagtgctctatttgtgagtggtgttaaaaaaacattcaaa 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1539 catcctgacttcttcttttgtagtgctctatttgtgagtggtgttaaaaaaacattcaaa 1598
Query: 386 gtggcatgctattctaaggcaatatggaaacatgagagttcctctttgaatatctggagc 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1599 gtggcatgctattctaaggcaatatggaaacatgagagttcctctttgaatatctggagc 1658
Query: 446 tccagcctattaggcaagttttgtcagactgcttgtatggaagaggttttcggggaacca 505
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 1659 tccagcctattaggcaagttttgtcagactgcttgtatggaagaggttttcgggaaacca 1718
Query: 506 tattcgactcggtagagtaagagatatgtctgatttatcctcatatgaaaaggttttaag 565
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 1719 tattcgactcggtagagtaagagatatgtctgatttatcctcatatgaaaggtttttaag 1778
Query: 566 attataagaatcaagtatcgaaatattttgcaaaattttggcactatggccgattggtta 625
| ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct: 1779 aatataagaatcaagtatcgaaata-tttgcaaaattttggcactatggccgagtggtta 1837
Query: 626 atgcgacagacttgaaatctgttggcctctgcccggcctgg-tcaaatcctgctggggtc 684
| ||||||||||||||||||||||| ||||||||| |||| |||||||||||||| |||
Sbjct: 1838 aggcgacagacttgaaatctgttgggctctgcccgcgctggttcaaatcctgctggtgtc 1897
Query: 685 gttattttttgg-aatacctttttttaacta 714
|||||||||||| |||| |||||||||||||
Sbjct: 1898 gttattttttggaaataactttttttaacta 1928
>3x_Contig905
Length = 2723
Score = 123 bits (62), Expect = 7e-28
Identities = 90/98 (91%), Gaps = 1/98 (1%)
Strand = Plus / Minus
Query: 598 aaattttggcactatggccgattggttaatgcgacagacttgaaatctgttggcctctgc 657
|||||| |||||||||||||| ||||||| ||||||||||||||||||||||| ||||||
Sbjct: 1804 aaatttaggcactatggccgagtggttaaggcgacagacttgaaatctgttgggctctgc 1745
Query: 658 ccggcctgg-tcaaatcctgctggggtcgttatttttt 694
||| |||| |||||||||||||| |||||||||||||
Sbjct: 1744 ccgcgctggttcaaatcctgctggtgtcgttatttttt 1707
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6285
Number of Sequences: 1807
Number of extensions: 6285
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 2
length of query: 947
length of database: 10,358,551
effective HSP length: 16
effective length of query: 931
effective length of database: 10,329,639
effective search space: 9616893909
effective search space used: 9616893909
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)