BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZG10RM1.SCF screened BAC_end
(922 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1237 1289 0.0
>3x_Contig1237
Length = 6632
Score = 1289 bits (650), Expect = 0.0
Identities = 756/785 (96%), Gaps = 5/785 (0%)
Strand = Plus / Minus
Query: 44 cttaactccgttgcaaaactataacgacacacattcagacgatgatgaagaacaacaccg 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3987 cttaactccgttgcaaaactataacgacacacattcagacgatgatgaagaacaacaccg 3928
Query: 104 tcaagataaaagaatgtcttacgacccaagagattctgttggatcaccaactactacctt 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3927 tcaagataaaagaatgtcttacgacccaagagattctgttggatcaccaactactacctt 3868
Query: 164 attcgaccctcatggtaaacatcatgatgatctaagaaatggcaagtatcgtgatgactc 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3867 attcgaccctcatggtaaacatcatgatgatctaagaaatggcaagtatcgtgatgactc 3808
Query: 224 aaactccttcgatatgggagaggaagacttaagtaagaacctggatttggaacaaaggct 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3807 aaactccttcgatatgggagaggaagacttaagtaagaacctggatttggaacaaaggct 3748
Query: 284 attggaatctgaagggttccagttgagacatcaaagtaaatcatcgatcaaaagagatac 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3747 attggaatctgaagggttccagttgagacatcaaagtaaatcatcgatcaaaagagatac 3688
Query: 344 ttacttggccaaattgttcaaatcctctgctctacaatcagtggcaagaaacttttccag 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3687 ttacttggccaaattgttcaaatcctctgctctacaatcagtggcaagaaacttttccag 3628
Query: 404 agttttctccttcttattccattgtacaaattacccaatgttattattcttttttgttta 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3627 agttttctccttcttattccattgtacaaattacccaatgttattattcttttttgttta 3568
Query: 464 tatcccaactggtctcgcagtaggtaacttgttgggtgaaggaaatagagttttcaattt 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3567 tatcccaactggtctcgcagtaggtaacttgttgggtgaaggaaatagagttttcaattt 3508
Query: 524 gttagcacattggattaaaggtggtgtctttgtgtccttgggtattttgtctttagctcg 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3507 gttagcacattggattaaaggtggtgtctttgtgtccttgggtattttgtctttagctcg 3448
Query: 584 ntactgggggttttggtg-caacaatgggttgggcatggtacaagattattattttcaag 642
|||| | |||||||||| ||||||| |||||||||||| ||||||||||||||||||||
Sbjct: 3447 ttact-gtggttttggtgtcaacaat-ggttgggcatggaacaagattattattttcaag 3390
Query: 643 aaccaaaaggattccaattc-ttttggttcaaaattgcgccccaaggccgcataccaatg 701
||||||| ||||||||||| || |||||||||||||||||||||||| |||| |||||
Sbjct: 3389 aaccaaatagattccaattcattatggttcaaaattgcgccccaaggcggcatcacaatg 3330
Query: 702 aaatttttgaaaccttccttgattgcattttacgggtgtccaaacgtatttttggagcac 761
||||||| || ||| |||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 3329 gaattttttgaatctttcttgattgcattttacggctgtacaaacgtatttttggagcat 3270
Query: 762 ttggc-aatcccggtggagaatgggccgcttaagacttgcaacatgtttcttatggattc 820
||| | ||||| |||||||||||||| ||| |||||||||||||||||||| || ||||
Sbjct: 3269 ttgtcaaatccaggtggagaatgggcagctaaagacttgcaacatgtttctattgcattc 3210
Query: 821 atgtt 825
|||||
Sbjct: 3209 atgtt 3205
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7909
Number of Sequences: 1807
Number of extensions: 7909
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 1
length of query: 922
length of database: 10,358,551
effective HSP length: 16
effective length of query: 906
effective length of database: 10,329,639
effective search space: 9358652934
effective search space used: 9358652934
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)