BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZG11FM1.SCF screened BAC_end
(899 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1099 1051 0.0
>3x_Contig1099
Length = 3902
Score = 1051 bits (530), Expect = 0.0
Identities = 613/634 (96%), Gaps = 5/634 (0%)
Strand = Plus / Minus
Query: 85 cttctggtggtggaagatcatcagcaagagagacaattggtcgtgttgctgctggtgcca 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 cttctggtggtggaagatcatcagcaagagagacaattggtcgtgttgctgctggtgcca 741
Query: 145 ttgctgaaaagttcctaaaacagttatccaacgttgaaattgttgcctttgtcacccaaa 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 ttgctgaaaagttcctaaaacagttatccaacgttgaaattgttgcctttgtcacccaaa 681
Query: 205 tcggtgctgtcaagatgaacagagatccacaggatccaaaattccaacaggttctgaata 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tcggtgctgtcaagatgaacagagatccacaggatccaaaattccaacaggttctgaata 621
Query: 265 ccatcacaagagaaaaagttgatgccgctggcccaattagatgcccggattcatctgtcg 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ccatcacaagagaaaaagttgatgccgctggcccaattagatgcccggattcatctgtcg 561
Query: 325 ctgatgctatggtgaaggaaattgaaagatacagaggtgaaaaggattccattggtggtg 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ctgatgctatggtgaaggaaattgaaagatacagaggtgaaaaggattccattggtggtg 501
Query: 385 ttgtcacgtgtgtcatcagaaatctacctgcgggccttggtgaaccttgtttcgataaat 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ttgtcacgtgtgtcatcagaaatctacctgcgggccttggtgaaccttgtttcgataaat 441
Query: 445 tagaagccttgctagcacatgctatgctctcaatcccagcttccaagggttttcgagatt 504
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 440 tagaagccttgctagcacatgctatgctctcaatcccagcttccaaggg-tttcgagatt 382
Query: 505 ggttccggattcgatggcgtttgtttgccaggttcttaacataacgatcccttctacttt 564
|||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 381 ggttccggattcgatggcgtttgtttgccaggttctaagcataacgatcccttctacttc 322
Query: 565 gatgaggacaccggaagactaagaacaaagacaaacaactctgggggtattcaaggtggt 624
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 321 gatgaggacaccggaagactaagaacaaagacgaacaactctggtggtattcaaggtggt 262
Query: 625 atcttatatggagaaaac-tttacttctcttgaccttt-taatttgcagctactatttct 682
|||| | ||||||||||| | ||||||||| |||||| ||| |||||||||||||||
Sbjct: 261 atctcaaatggagaaaacatctacttctctgtacctttcaaatctgcagctactatttc- 203
Query: 683 ttaagaac-agtttctgcttcctacgacggtaaa 715
| |||||| || | ||||| ||||||||||||||
Sbjct: 202 tcaagaacaagctactgctacctacgacggtaaa 169
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6834
Number of Sequences: 1807
Number of extensions: 6834
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 899
length of database: 10,358,551
effective HSP length: 16
effective length of query: 883
effective length of database: 10,329,639
effective search space: 9121071237
effective search space used: 9121071237
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)