BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZG11RM1.SCF screened BAC_end
(906 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1749 1154 0.0
>3x_Contig1749
Length = 22923
Score = 1154 bits (582), Expect = 0.0
Identities = 592/594 (99%), Gaps = 1/594 (0%)
Strand = Plus / Minus
Query: 39 gcttataatgcgttgttaactttattaaagtcagaacatccagaaaggaaacacaaat-c 97
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 594 gcttataatgcgttgttaactttattaaagtcagaacatccagaaaggaaacacaaatgc 535
Query: 98 aaataagaagatcaagaaagattcccaacgcgctgaggaagacagtcctgaaaacgatgg 157
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 aaataagaagatcaagaaagattcccaacgcgctgaggaagacagtcctgaaaacgatgg 475
Query: 158 aattaatagtgaagatgaacaacaaaatattgaaaatgctttggatgatgtttctggatg 217
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 474 aattaatagtgaagatgaacaacaaaatattgaaaatgctttggatgatgtttctggagg 415
Query: 218 agttgtggatgaggaagatatggaagattcattatctgacgttgatgagagcgaagatga 277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 agttgtggatgaggaagatatggaagattcattatctgacgttgatgagagcgaagatga 355
Query: 278 atccgatccattcgaatcacatttcagcaaatatagtgaatcacgcttatatgctttcga 337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 atccgatccattcgaatcacatttcagcaaatatagtgaatcacgcttatatgctttcga 295
Query: 338 taaaggcttcaaagacaagactgtcaaatacaaatcttcgaaaacagatgtttcggaaga 397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 taaaggcttcaaagacaagactgtcaaatacaaatcttcgaaaacagatgtttcggaaga 235
Query: 398 agaatctctaatatattccaaaccgtgtctagatgatgaggaagttttgcctgtgaaggg 457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 agaatctctaatatattccaaaccgtgtctagatgatgaggaagttttgcctgtgaaggg 175
Query: 458 gaaacaaactttgagctcatatttcatcaaacagaagttgaaattagcaaacgatttcca 517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 174 gaaacaaactttgagctcatatttcatcaaacagaagttgaaattagcaaacgatttcca 115
Query: 518 aaacaatggcttaccgttaactgaaattcaaaaggaacttgtagatccaatgtttcagta 577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114 aaacaatggcttaccgttaactgaaattcaaaaggaacttgtagatccaatgtttcagta 55
Query: 578 taaagatatgttatacgaatacgatgattatgctgatgaagatcaatacagaga 631
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54 taaagatatgttatacgaatacgatgattatgctgatgaagatcaatacagaga 1
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9716
Number of Sequences: 1807
Number of extensions: 9716
Number of successful extensions: 67
Number of sequences better than 1.0e-20: 1
length of query: 906
length of database: 10,358,551
effective HSP length: 16
effective length of query: 890
effective length of database: 10,329,639
effective search space: 9193378710
effective search space used: 9193378710
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)