BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZG12FM1.SCF screened BAC_end
(950 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1508 936 0.0
>3x_Contig1508
Length = 7899
Score = 936 bits (472), Expect = 0.0
Identities = 544/559 (97%), Gaps = 7/559 (1%)
Strand = Plus / Minus
Query: 87 cgacaatatgaagaaataagaagtgaaattcagttagagaaaagaaggtttaaaatataa 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6882 cgacaatatgaagaaataagaagtgaaattcagttagagaaaagaaggtttaaaatataa 6823
Query: 147 aaatagttaaactttgaatcatagataccggtttcaagccacctagattagccgaataag 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6822 aaatagttaaactttgaatcatagataccggtttcaagccacctagattagccgaataag 6763
Query: 207 tgaattgtgggatcaattggtgtactatagaatatactcaaccgtttttctgtatcatag 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6762 tgaattgtgggatcaattggtgtactatagaatatactcaaccgtttttctgtatcatag 6703
Query: 267 tcgtgtgtgtttgctttttctcttttatttcctgtgcttaatactcaatcactcactata 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6702 tcgtgtgtgtttgctttttctcttttatttcctgtgcttaatactcaatcactcactata 6643
Query: 327 ttgaatattagttaagggtatttgtttgtttgttactgattttttagtttttgatttact 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6642 ttgaatattagttaagggtatttgtttgtttgttactgattttttagtttttgatttact 6583
Query: 387 gctttgttataaccggaccttcctttattttcaataatgtctgaaatcactcctgatgtt 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6582 gctttgttataaccggaccttcctttattttcaataatgtctgaaatcactcctgatgtt 6523
Query: 447 gctgaagattattctcaaatcggggtagatacgccaccttcttctgctgatgattcgtcg 506
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 6522 gctgaagattattctcaaatcgtggtagatacgccaccttcttctgctgatgattcgtcg 6463
Query: 507 aaaatagctggccaaac-attgaacaaactgaaaagtctaatgggggaaaaagctggcac 565
||| ||||||||||||| |||||||||||||||||||||||| || ||| |||||| |||
Sbjct: 6462 aaattagctggccaaacaattgaacaaactgaaaagtctaat-ggtgaagaagctgccac 6404
Query: 566 tgggccagcggtcaaggtttttatttccaagatggggaaggaaatgctggctgcgtnttg 625
|| |||||||||||||| ||||||||||||||| ||| |||||||||| ||||||| ||
Sbjct: 6403 tgcgccagcggtcaagg-ttttatttccaagattggg-aggaaatgct-gctgcgtc-tg 6348
Query: 626 cttctgggcaatgctgtct 644
||||| |||||||||||||
Sbjct: 6347 cttct-ggcaatgctgtct 6330
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,738
Number of Sequences: 1807
Number of extensions: 14738
Number of successful extensions: 152
Number of sequences better than 1.0e-20: 1
length of query: 950
length of database: 10,358,551
effective HSP length: 16
effective length of query: 934
effective length of database: 10,329,639
effective search space: 9647882826
effective search space used: 9647882826
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)