BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC27ZG12RM1.SCF screened BAC_end
         (949 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1487                                                        1261   0.0  
3x_Contig1718                                                         131   3e-30
3x_Contig1623                                                         131   3e-30
3x_Contig1762                                                         123   7e-28
3x_Contig17                                                           123   7e-28
3x_Contig1390                                                         115   2e-25

>3x_Contig1487 
          Length = 9002

 Score = 1261 bits (636), Expect = 0.0
 Identities = 680/692 (98%), Gaps = 2/692 (0%)
 Strand = Plus / Minus

                                                                        
Query: 50   gcttcgataaacgaagtttaacttctgcaaagcatgcgagaggccctgggttcaattccc 109
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 5400 gcttcgataaacgaagtttaactactgcaaagcatgcgagaggccctgggttcaattccc 5341

                                                                        
Query: 110  agctcgccccgaaattatttttgactaacaagacttttagtcacgtgacctcgtttactt 169
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5340 agctcgccccgaaattatttttgactaacaagacttttagtcacgtgacctcgtttactt 5281

                                                                        
Query: 170  tcctgttttatttcaacaaaagtaaaaattcttttcacctaccaaataaggtaccataaa 229
            |||||   ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 5280 tcctgaagtatttcaacaaaagtaaaaattcttttcacctaccaaataaggcaccataaa 5221

                                                                        
Query: 230  tctacaatgacaatgctcttattgcagccaattgattgctatagttctgcttttctctat 289
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5220 gctacaatgacaatgctcttattgcagccaattgattgctatagttctgcttttctctat 5161

                                                                        
Query: 290  agtctacttccactgggcgctcaaagttacaacagttatcattctccgttgaattatctg 349
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5160 agtctacttccactgggcgctcaaagttacaacagttatcattctccgttgaattatctg 5101

                                                                        
Query: 350  tgcatttagccgtttcagttttattcgaagaatacactaatagaatatactgtcaaaaat 409
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5100 tgcatttagccgtttcagttttattcgaagaatacactaatagaatatactgtcaaaaat 5041

                                                                        
Query: 410  acacgatgtctatgatatcggctagagcgagattgagtcttgcccaatcccttagaatta 469
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5040 acacgatgtctatgatatcggctagagcgagattgagtcttgcccaatcccttagaatta 4981

                                                                        
Query: 470  atgggggtcttagaagtttttcaaacgctagagtacaactgaaccagaaacaaagtaaca 529
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4980 atgggggtcttagaagtttttcaaacgctagagtacaactgaaccagaaacaaagtaaca 4921

                                                                        
Query: 530  gtgacggtttcagtggtgattcgacaacacacttcgggtcgaggactgtgttgaaagagg 589
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4920 gtgacggtttcagtggtgattcgacaacacacttcgggtcgaggactgtgttgaaagagg 4861

                                                                        
Query: 590  -aaaagagaaactcgtcggttacgtgttttctagtgttgcttccaagtacgatgtgatga 648
             ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 4860 aaaaagagaaactcgtcggtaacgtgttttctagtgttgcttccaagtacgatgtgatga 4801

                                                                        
Query: 649  acgacgtgatgtctctagggatccatagactatgggaggaccatttcattaataagttag 708
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 4800 acgacgtgatgtctctagggatccatagactatggaaggaccatttcattaataagttag 4741

                                            
Query: 709  acgcagggaaaaagacctaactttacggaacc 740
            ||||| || ||||||||||||| |||||||||
Sbjct: 4740 acgca-ggtaaaagacctaactctacggaacc 4710


>3x_Contig1718 
          Length = 19496

 Score =  131 bits (66), Expect = 3e-30
 Identities = 69/70 (98%)
 Strand = Plus / Plus

                                                                        
Query: 50   gcttcgataaacgaagtttaacttctgcaaagcatgcgagaggccctgggttcaattccc 109
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 4958 gcttcgataaacgaagtttaactactgcaaagcatgcgagaggccctgggttcaattccc 5017

                      
Query: 110  agctcgcccc 119
            ||||||||||
Sbjct: 5018 agctcgcccc 5027


>3x_Contig1623 
          Length = 14379

 Score =  131 bits (66), Expect = 3e-30
 Identities = 69/70 (98%)
 Strand = Plus / Minus

                                                                        
Query: 50   gcttcgataaacgaagtttaacttctgcaaagcatgcgagaggccctgggttcaattccc 109
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 7076 gcttcgataaacgaagtttaactactgcaaagcatgcgagaggccctgggttcaattccc 7017

                      
Query: 110  agctcgcccc 119
            ||||||||||
Sbjct: 7016 agctcgcccc 7007


>3x_Contig1762 
          Length = 22098

 Score =  123 bits (62), Expect = 7e-28
 Identities = 68/70 (97%)
 Strand = Plus / Plus

                                                                        
Query: 50   gcttcgataaacgaagtttaacttctgcaaagcatgcgagaggccctgggttcaattccc 109
            ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 6162 gcttcgataaacggagtttaactactgcaaagcatgcgagaggccctgggttcaattccc 6221

                      
Query: 110  agctcgcccc 119
            ||||||||||
Sbjct: 6222 agctcgcccc 6231


>3x_Contig17 
          Length = 819

 Score =  123 bits (62), Expect = 7e-28
 Identities = 68/70 (97%)
 Strand = Plus / Minus

                                                                       
Query: 50  gcttcgataaacgaagtttaacttctgcaaagcatgcgagaggccctgggttcaattccc 109
           |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 206 gcttcgataaacgaggtttaactactgcaaagcatgcgagaggccctgggttcaattccc 147

                     
Query: 110 agctcgcccc 119
           ||||||||||
Sbjct: 146 agctcgcccc 137


>3x_Contig1390 
          Length = 7609

 Score =  115 bits (58), Expect = 2e-25
 Identities = 68/70 (97%), Gaps = 1/70 (1%)
 Strand = Plus / Plus

                                                                        
Query: 50   gcttcgataaacgaagtttaacttctgcaaagcatgcgagaggccctgggttcaattccc 109
            ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct: 5495 gcttcgataaacgaagtttaactactgcaa-gcatgcgagaggccctgggttcaattccc 5553

                      
Query: 110  agctcgcccc 119
            ||||||||||
Sbjct: 5554 agctcgcccc 5563


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6077
Number of Sequences: 1807
Number of extensions: 6077
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 6
length of query: 949
length of database: 10,358,551
effective HSP length: 16
effective length of query: 933
effective length of database: 10,329,639
effective search space: 9637553187
effective search space used: 9637553187
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)