BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC27ZH01FM1.SCF screened BAC_end
         (947 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1515                                                        1322   0.0  

>3x_Contig1515 
          Length = 8855

 Score = 1322 bits (667), Expect = 0.0
 Identities = 697/703 (99%), Gaps = 3/703 (0%)
 Strand = Plus / Plus

                                                                        
Query: 88   tgctgttgcaatgctttaaaaacaacatcggaatgtgtgttgtagataaagattatcgga 147
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3030 tgctgttgcaatgctttaaaaacaacatcggaatgtgtgttgtagataaagattatcgga 3089

                                                                        
Query: 148  ctgattacaagaaatataacgttcaggaattgttcgaaatgaagcataaaaataaagaaa 207
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3090 ctgattacaagaaatataacgttcaggaattgttcgaaatgaagcataaaaataaagaaa 3149

                                                                        
Query: 208  ctactcctactactgcagagtctgccccggcttctacccaaagcaatactagcaaataga 267
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3150 ctactcctactactgcagagtctgccccggcttctacccaaagcaatactagcaaataga 3209

                                                                        
Query: 268  cccttttgtataatgtattaatttcgctacattcaattaaatacttaacgtacggtataa 327
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3210 cccttttgtataatgtattaatttcgctacattcaattaaatacttaacgtacggtataa 3269

                                                                        
Query: 328  atactccgttggttgttgccaagcaagccaatcacttgacgtagttgggaacaatcccat 387
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3270 atactccgttggttgttgccaagcaagccaatcacttgacgtagttgggaacaatcccat 3329

                                                                        
Query: 388  tgaattcaacttatgcaaacctattcccatgaggattaattggtatatcacgtacataat 447
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3330 tgaattcaacttatgcaaacctattcccatgaggattaattggtatatcacgtacataat 3389

                                                                        
Query: 448  catggctgcaactacaggcggggttacatcattatctttgttgattaaatgttgaaattt 507
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3390 catggctgcaactacaggcggggttacatcattatctttgttgattaaatgttgaaattt 3449

                                                                        
Query: 508  tgacttaactcctaagatacttttgatgggatttgagaccaacatcacagcagtcattat 567
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3450 tgacttaactcctaagatacttttgatgggatttgagaccaacatcacagcagtcattat 3509

                                                                        
Query: 568  aggaataatttgcaagctgttaccagacatatatgacataattatattcatgggaacaga 627
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3510 aggaataatttgcaagctgttaccagacatatatgacataattatattcatgggaacaga 3569

                                                                        
Query: 628  tttgagaggctcagaagatatctgccatgcccgttctgcagtgagtttggctatacgatt 687
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3570 tttgagaggctcagaagatatctgccatgcccgttctgcagtgagtttggctatacgatt 3629

                                                                        
Query: 688  ttgagcgtcatgatctatcaccttagggggcttcttgcccttcgatctttaggtttcttt 747
            |||||||||||||||||||||||||||||||||| || |||||||||| || ||||||||
Sbjct: 3630 ttgagcgtcatgatctatcaccttagggggcttc-tgtccttcgatctcta-gtttcttt 3687

                                                       
Query: 748  attcc-aacggatccggcgatttaccaccattgacactatttc 789
            ||||| |||||||||||| ||||||||||||||||||||||||
Sbjct: 3688 attccaaacggatccggcaatttaccaccattgacactatttc 3730


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6684
Number of Sequences: 1807
Number of extensions: 6684
Number of successful extensions: 39
Number of sequences better than 1.0e-20: 1
length of query: 947
length of database: 10,358,551
effective HSP length: 16
effective length of query: 931
effective length of database: 10,329,639
effective search space: 9616893909
effective search space used: 9616893909
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)