BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC27ZH01RM1.SCF screened BAC_end
         (937 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1592                                                        1352   0.0  

>3x_Contig1592 
          Length = 12307

 Score = 1352 bits (682), Expect = 0.0
 Identities = 742/758 (97%), Gaps = 3/758 (0%)
 Strand = Plus / Plus

                                                                        
Query: 47   tggtccaaactgtgacaagggcaatagacgaagatgaagaagatgaagatgatgatgatc 106
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1352 tggtccaaactgtgacaagggcaatagacgaagatgaagaagatgaagatgatgatgatc 1411

                                                                        
Query: 107  atcatcatgacgtcgaatccgctgacgatatgaaaagcaaagatatctcgattccaccta 166
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1412 atcatcatgacgtcgaatccgctgacgatatgaaaagcaaagatatctcgattccaccta 1471

                                                                        
Query: 167  gcatttctatatctgacaatttcggcacatttaggttagtgttacagtcaattcttataa 226
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1472 gcatttctatatctgacaatttcggcacatttaggttagtgttacagtcaattcttataa 1531

                                                                        
Query: 227  ccaacaaggaaacagaacaaatctttactggcataagacaaagcgaaaacgatagaagta 286
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1532 ccaacaaggaaacagaacaaatctttactggcataagacaaagcgaaaacgatagaagta 1591

                                                                        
Query: 287  atgctgacataaatgatgattggctcttatacgatacggattttaatttaggcaatttac 346
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1592 atgctgacataaatgatgattggctcttatacgatacggattttaatttaggcaatttac 1651

                                                                        
Query: 347  aaatgttgtcgttatacgatattttggacttcagtaaatttttacccaaaattctgtttt 406
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1652 aaatgttgtcgttatacgatattttggacttcagtaaatttttacccaaaattctgtttt 1711

                                                                        
Query: 407  actctatgatccacgttaaggattctgtcgacgataacacggagctatctttacaacatc 466
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1712 actctatgatccacgttaaggattctgtcgacgataacacggagctatctttacaacatc 1771

                                                                        
Query: 467  tgattacagtcaataatactctgactaatggaaatatgtatagtccacatgaagttgatg 526
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1772 tgattacagtcaataatactctgactaatggaaatatgtatagtccacatgaagttgatg 1831

                                                                        
Query: 527  attcaatgagtgaattaagttctgataactcgattgaatgttacacaggaaattcaaatg 586
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1832 attcaatgagtgaattaagttctgataactcgattgaatgttacacaggaaattcaaatg 1891

                                                                        
Query: 587  actccattgcggatgaaccagtcatcggactgtactcgccagcaactgcggctacagcaa 646
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 1892 actccattgcggatgaaccagtcatcggactgtactcgccagcaactgcggctacagcag 1951

                                                                        
Query: 647  gtcataggtccatcagaacggtggaaagtattggtgcgtgggccttaaataggtcc-ata 705
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 1952 gtcataggtccatcagaacggtggaaagtattggtgcgtgggccttaaataggtccaata 2011

                                                                        
Query: 706  ccaaaaaaagtttggaaactgtgcaaatcacggt-tttagggacttcagagggaatttat 764
            ||||||||||| ||||||||||||||| |||||| |  ||||||| ||||||||||||  
Sbjct: 2012 ccaaaaaaagtatggaaactgtgcaaaacacggtatcaagggactccagagggaatttca 2071

                                                  
Query: 765  tgaccagattc-agtttcaaccaatgcctgggttattg 801
            ||| |||| || ||| ||| |||||||||| |||||||
Sbjct: 2072 tgaacagaatcaagtctcagccaatgcctgtgttattg 2109


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7970
Number of Sequences: 1807
Number of extensions: 7970
Number of successful extensions: 245
Number of sequences better than 1.0e-20: 1
length of query: 937
length of database: 10,358,551
effective HSP length: 16
effective length of query: 921
effective length of database: 10,329,639
effective search space: 9513597519
effective search space used: 9513597519
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)