BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZH02FM1.SCF screened BAC_end
(878 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1345 1128 0.0
>3x_Contig1345
Length = 7291
Score = 1128 bits (569), Expect = 0.0
Identities = 637/649 (98%), Gaps = 8/649 (1%)
Strand = Plus / Plus
Query: 86 tggttctcttacataaggtattacaggaaggtcatccttctgcattggtggagggaatta 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6380 tggttctcttacataaggtattacaggaaggtcatccttctgcattggtggagggaatta 6439
Query: 146 gaaatatagactggattgaatcgttaagtaggattttttctgttgattcagatgatggtt 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6440 gaaatatagactggattgaatcgttaagtaggattttttctgttgattcagatgatggtt 6499
Query: 206 ctaaatatgggtcctcaaggatgcgttatataggagacgagtatgccaaagccataggtg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6500 ctaaatatgggtcctcaaggatgcgttatataggagacgagtatgccaaagccataggtg 6559
Query: 266 aatatgtgttttttctagtcgagaaattacaatttcataagtcgcataaagggtttaatg 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6560 aatatgtgttttttctagtcgagaaattacaatttcataagtcgcataaagggtttaatg 6619
Query: 326 gtatttttgaatatgaagagtatgtttctttggtttcagtgtctgatcctaacgaaggtt 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6620 gtatttttgaatatgaagagtatgtttctttggtttcagtgtctgatcctaacgaaggtt 6679
Query: 386 acgagactgttcttgatttaatgaatcttgaagatgttgctgataacttgcagaaattga 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6680 acgagactgttcttgatttaatgaatcttgaagatgttgctgataacttgcagaaattga 6739
Query: 446 tctttgcgggcatatctaacagaaagagtgggtttggtagtttttcatctggtttagatt 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6740 tctttgcgggcatatctaacagaaagagtgggtttggtagtttttcatctggtttagatt 6799
Query: 506 gtagaggcgccgtcttaattcctttggttagtgaaacatatggaatattcaagtttgtta 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6800 gtagaggcgccgtcttaattcctttggttagtgaaacatatggaatattcaagtttgtta 6859
Query: 566 cgtctatgatgaaagctttgtattaacaaatgggtgattatgatgcttttagtggggttg 625
||||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||
Sbjct: 6860 cgtctatgatgaaagctttgtataaacaaatgggtgattatgatgctttaagt-gggttg 6918
Query: 626 tttgataggtataccgagc-atgtgcacgttt-aatgagttttattttga-tggaatact 682
||||||||||||||||||| |||||||||||| ||||||||||||||||| || ||||||
Sbjct: 6919 tttgataggtataccgagcaatgtgcacgtttaaatgagttttattttgattgtaatact 6978
Query: 683 gtt-aacctct-aaaaacttg-ttaccatccctac-ttgccttcggacc 727
||| ||||||| ||||||||| |||| |||||||| |||||||||||||
Sbjct: 6979 gttcaacctctaaaaaacttgattacaatccctactttgccttcggacc 7027
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7145
Number of Sequences: 1807
Number of extensions: 7145
Number of successful extensions: 64
Number of sequences better than 1.0e-20: 1
length of query: 878
length of database: 10,358,551
effective HSP length: 16
effective length of query: 862
effective length of database: 10,329,639
effective search space: 8904148818
effective search space used: 8904148818
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)