BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZH02RM1.SCF screened BAC_end
(919 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig468 1128 0.0
>3x_Contig468
Length = 2584
Score = 1128 bits (569), Expect = 0.0
Identities = 648/665 (97%), Gaps = 7/665 (1%)
Strand = Plus / Minus
Query: 40 aacagaggactt-aagaa-gatatt-attggaacaaaacc-tggagagttttccggtata 95
|||||||||||| ||||| |||||| |||||||||||||| |||||||||||||||||||
Sbjct: 1666 aacagaggacttcaagaaagatattcattggaacaaaaccatggagagttttccggtata 1607
Query: 96 ttaaacattaagtaagtaaatgcatttgatgaatatcatgagatttccaacaatattaac 155
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1606 ttaaacattaagtaagtaaatgcatttgatgaatatcatgagatttccaacaatattaac 1547
Query: 156 cattctctatctattatataaattttaaaccagataccaagctcatttttcccttaattt 215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1546 cattctctatctattatataaattttaaaccagataccaagctcatttttcccttaattt 1487
Query: 216 cagtttcaaactatttgtttcttgtaagattgcttcgatataccgatctttatctgcaga 275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1486 cagtttcaaactatttgtttcttgtaagattgcttcgatataccgatctttatctgcaga 1427
Query: 276 ttcttttcgcaatacttgaagctgagaagtgaggaatttgttggcgttttgttctatcgt 335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1426 ttcttttcgcaatacttgaagctgagaagtgaggaatttgttggcgttttgttctatcgt 1367
Query: 336 atacttcttgaatgtttgtacaaggatgttattgctgagattttggaacaactcgttcga 395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1366 atacttcttgaatgtttgtacaaggatgttattgctgagattttggaacaactcgttcga 1307
Query: 396 atccgattcgaaagattgcaaatgcgccaaaaggtccctttcggaatgatattcaaggtt 455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1306 atccgattcgaaagattgcaaatgcgccaaaaggtccctttcggaatgatattcaaggtt 1247
Query: 456 tctgtaagagagagggttaaaacttgaaacttggaataattgctgttcgacatgcaggag 515
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1246 tctgtaagagagagggttaaaacttgaaacttggaataattgctgttcgacatgcaggag 1187
Query: 516 atcagctaaatcaatagcggatttgaaagacatgatgtattgagttaaaaactgaatgca 575
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1186 atcagctaaatcaatagcggatttgaaagacatgatgtattgagttaaaaactgaatgca 1127
Query: 576 gtaaattttgaaagcttgaatcccattaacgtatttacttgttagtcccttctgcttacg 635
|||| ||| |||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1126 gtaattttgaaaagctagaatcccatcaacgtatttacttgttagtcccttctgcttacg 1067
Query: 636 caaattcaaatacttttttacgcttcctttgggcaatctttcactaaacctgctatttcc 695
|||| || ||||| || ||||||| ||||| |||||||||||||| ||||||||||||||
Sbjct: 1066 caaa-tccaataccttcttacgctcccttt-ggcaatctttcact-aacctgctatttcc 1010
Query: 696 cttgg 700
||||
Sbjct: 1009 tttgg 1005
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8530
Number of Sequences: 1807
Number of extensions: 8530
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 1
length of query: 919
length of database: 10,358,551
effective HSP length: 16
effective length of query: 903
effective length of database: 10,329,639
effective search space: 9327664017
effective search space used: 9327664017
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)