BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZH04FM1.SCF screened BAC_end
(910 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig669 876 0.0
>3x_Contig669
Length = 2015
Score = 876 bits (442), Expect = 0.0
Identities = 479/489 (97%), Gaps = 2/489 (0%)
Strand = Plus / Plus
Query: 86 caataattcatggactttcttcaatacaagcgcagagttgtagatagagccttggccgta 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 caataattcatggactttcttcaatacaagcgcagagttgtagatagagccttggccgta 528
Query: 146 ttcaaggtatgccaagtttgacaaaattctaacggtttcaaatgaatcaacaccgtaaca 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 ttcaaggtatgccaagtttgacaaaattctaacggtttcaaatgaatcaacaccgtaaca 588
Query: 206 cctttcggaaagcaaagcagccttgttacagaaagtaacagcttgtgaatactggcccaa 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 cctttcggaaagcaaagcagccttgttacagaaagtaacagcttgtgaatactggcccaa 648
Query: 266 tctagaatacatattagaaagtaacaaatacgaagaaacgagtgatggatgaactaaacc 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 tctagaatacatattagaaagtaacaaatacgaagaaacgagtgatggatgaactaaacc 708
Query: 326 gaaaatatcttcacggaatgcaatactttgaccaagcaaagtgagagcttcattcatttt 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 gaaaatatcttcacggaatgcaatactttgaccaagcaaagtgagagcttcattcatttt 768
Query: 386 cttcgcacgttctttggcttgctcttcttctttcgaagttgctccagaagatccggcgtc 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 cttcgcacgttctttggcttgctcttcttctttcgaagttgctccagaagatccggcgtc 828
Query: 446 ctcaccgtcagctgcagctttctttgattcttcttttttcttctcagcctcctcctcttc 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 829 ctcaccgtcagctgcagctttctttgattcttcttttttcttctcagcctcctcctcttc 888
Query: 506 -acacntacagcatttacttgagaagccccttggaatcacaacttcttaagcaattaagc 564
|||| ||||||||| ||| ||||||||||||| | |||||| |||| |||||| ||||
Sbjct: 889 aacacttacagcattaactagagaagccccttgaatccacaac-tcttcagcaatcaagc 947
Query: 565 tttgaaatt 573
|||||||||
Sbjct: 948 tttgaaatt 956
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 24,111
Number of Sequences: 1807
Number of extensions: 24111
Number of successful extensions: 3803
Number of sequences better than 1.0e-20: 1
length of query: 910
length of database: 10,358,551
effective HSP length: 16
effective length of query: 894
effective length of database: 10,329,639
effective search space: 9234697266
effective search space used: 9234697266
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)