BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZH04RM1.SCF screened BAC_end
(935 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1776 1269 0.0
>3x_Contig1776
Length = 26138
Score = 1269 bits (640), Expect = 0.0
Identities = 697/712 (97%), Gaps = 3/712 (0%)
Strand = Plus / Plus
Query: 46 ctttagccaagatacttcttggggaaggaggcagaacaaataaagtgctttgagccatta 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11824 ctttagccaagatacttcttggggaaggaggcagaacaaataaagtgctttgagccatta 11883
Query: 106 tgaaatgatatccaacaaaaagatgcttctgtatggacgtccttatgacctgaactgaat 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11884 tgaaatgatatccaacaaaaagatgcttctgtatggacgtccttatgacctgaactgaat 11943
Query: 166 attgaaaatcaaacttgaacacacactgcacaaacaaataattgtgttctgaatcgaagt 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11944 attgaaaatcaaacttgaacacacactgcacaaacaaataattgtgttctgaatcgaagt 12003
Query: 226 aacaagaatggaaaaaatttactattaatcgtacccataacatatttatacaaagtaaat 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12004 aacaagaatggaaaaaatttactattaatcgtacccataacatatttatacaaagtaaat 12063
Query: 286 gtgagaagttttgaaaaaaaaaactgaagaaaaaaaaaaacttggaaaaacataaaaatt 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12064 gtgagaagttttgaaaaaaaaaactgaagaaaaaaaaaaacttggaaaaacataaaaatt 12123
Query: 346 ttgaatagtcatttttccttatacgggctattttaactgtagtgatcaagtaagtaattg 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12124 ttgaatagtcatttttccttatacgggctattttaactgtagtgatcaagtaagtaattg 12183
Query: 406 aaaggcctttagagcttcttcttttcacgtagcggctggaacaaaaagaaatttgttttg 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12184 aaaggcctttagagcttcttcttttcacgtagcggctggaacaaaaagaaatttgttttg 12243
Query: 466 gattttcaatttttggcttcgagagatgagccgtgggtaatgattgggggcaagtatcat 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12244 gattttcaatttttggcttcgagagatgagccgtgggtaatgattgggggcaagtatcat 12303
Query: 526 tggctatgagggcattgtcaaatggctagaagaatgatggtgtacatgtggcaacaataa 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12304 tggctatgagggcattgtcaaatggctagaagaatgatggtgtacatgtggcaacaataa 12363
Query: 586 aatggttgaagtctgttactgtacagtacttctgtacattgtatatacagaagtaatttt 645
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct: 12364 aatggttgaagtctgttactgtacagtacttctgtacattgtatatacagaagtcatctt 12423
Query: 646 ccgctcgttttgactaaagtcacgtgacttattt-aaggggattctttttttttttgaaa 704
||||||||||||||||| |||||||||||||||| ||| | |||||||||||||| ||
Sbjct: 12424 ccgctcgttttgactaaggtcacgtgacttatttaaagtgtattcttttttttttgtaat 12483
Query: 705 tttccctgt-gaaaaaaaaccttaaagattc-ccataccggatattctcaaa 754
||||||||| ||||| |||||| |||||||| |||||| ||||||||||||
Sbjct: 12484 tttccctgtagaaaagaaacctcaaagattcaccatacgtgatattctcaaa 12535
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 21,942
Number of Sequences: 1807
Number of extensions: 21942
Number of successful extensions: 193
Number of sequences better than 1.0e-20: 1
length of query: 935
length of database: 10,358,551
effective HSP length: 16
effective length of query: 919
effective length of database: 10,329,639
effective search space: 9492938241
effective search space used: 9492938241
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)