BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZH05FM1.SCF screened BAC_end
(931 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1009 1231 0.0
>3x_Contig1009
Length = 4650
Score = 1231 bits (621), Expect = 0.0
Identities = 647/653 (99%), Gaps = 2/653 (0%)
Strand = Plus / Minus
Query: 85 tctcttgaatatcgtactggcaatcatctcgtaataggtgtatatgtatatagtttgagt 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1600 tctcttgaatatcgtactggcaatcatctcgtaataggtgtatatgtatatagtttgagt 1541
Query: 145 tttatgtttgtgtttaacctcgtgacaatacacatacatatatttaaatcctaatataaa 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1540 tttatgtttgtgtttaacctcgtgacaatacacatacatatatttaaatcctaatataaa 1481
Query: 205 atatactctatcacaagaaccgaatcttcaactattcacatttcatacttcttatatata 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1480 atatactctatcacaagaaccgaatcttcaactattcacatttcatacttcttatatata 1421
Query: 265 aaactagaaccgaaaaccatcttagtgtaacgatactaacactctgtgtgcatattaatc 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1420 aaactagaaccgaaaaccatcttagtgtaacgatactaacactctgtgtgcatattaatc 1361
Query: 325 tcgggctaaacgaagcataaaaaagtcaaaccaaaaacagttaaaatgctaaagataacg 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1360 tcgggctaaacgaagcataaaaaagtcaaaccaaaaacagttaaaatgctaaagataacg 1301
Query: 385 aggtaactgtcagaaagtcagtctgagacagctgttctaacctgatttccagttttaagg 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1300 aggtaactgtcagaaagtcagtctgagacagctgttctaacctgatttccagttttaagg 1241
Query: 445 tacattacagtacaatgcagatactcagctaggcgaattttttttattttgagaattttt 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1240 tacattacagtacaatgcagatactcagctaggcgaattttttttattttgagaattttt 1181
Query: 505 tgttggctttttcttttgcatcttagaaacgtgtgtaggactgagagttttgtgcgaaat 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1180 tgttggctttttcttttgcatcttagaaacgtgtgtaggactgagagttttgtgcgaaat 1121
Query: 565 cttgagtgtgtggactgagaaacggtgaaataaatgtggtctgactaagtgtcattgtga 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1120 cttgagtgtgtggactgagaaacggtgaaataaatgtggtctgactaagtgtcattgtga 1061
Query: 625 acgacgccgacacatagggctgtgccgggggcctgtacccttttccacacagtagtttta 684
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1060 acgacgccgacacatagggctgtgccgggggcctgtacccttttccacacagtagtaata 1001
Query: 685 atattaaacattagctttcggtgatgtttaaccggcttaaactgtaaactatt 737
||| ||||||||||| ||||||||||||||| |||| ||||||||||||||||
Sbjct: 1000 ataataaacattagc-ttcggtgatgtttaa-cggcataaactgtaaactatt 950
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7505
Number of Sequences: 1807
Number of extensions: 7505
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 931
length of database: 10,358,551
effective HSP length: 16
effective length of query: 915
effective length of database: 10,329,639
effective search space: 9451619685
effective search space used: 9451619685
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)