BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZH05RM1.SCF screened BAC_end
(900 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1426 1431 0.0
>3x_Contig1426
Length = 8319
Score = 1431 bits (722), Expect = 0.0
Identities = 764/774 (98%), Gaps = 3/774 (0%)
Strand = Plus / Plus
Query: 43 aagcttccagcagatgtatatttgccagcaaattcatggatgattccttttttaaaaagt 102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5941 aagcttccagcagatgtatatttgccagcaaattcatggatgattccttttttaaaaagt 6000
Query: 103 actccggatttgatcgcttctgagagaatccatcttagagacatatcacttaaaaaatga 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6001 actccggatttgatcgcttctgagagaatccatcttagagacatatcacttaaaaaatga 6060
Query: 163 tttttctcagtgatatccggtggccaactcccaccaatatctgagtgatcgcctggaaac 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6061 tttttctcagtgatatccggtggccaactcccaccaatatctgagtgatcgcctggaaac 6120
Query: 223 cacttctctattagatccgatgatgtccttttactatcaaaagtaccatggggagagtcc 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6121 cacttctctattagatccgatgatgtccttttactatcaaaagtaccatggggagagtcc 6180
Query: 283 acctcgaatataccttcaactctctggttcacgaaattatctgttctttgggaatgttcc 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6181 acctcgaatataccttcaactctctggttcacgaaattatctgttctttgggaatgttcc 6240
Query: 343 agctctaggaaattgttgattcgggatattagttcttgtacggacttactagattgtgat 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6241 agctctaggaaattgttgattcgggatattagttcttgtacggacttactagattgtgat 6300
Query: 403 tgtgatgaattaggtcttgagccaatggtatgatttataaattggttactggtactgtga 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6301 tgtgatgaattaggtcttgagccaatggtatgatttataaattggttactggtactgtga 6360
Query: 463 tagtttgttttcggggcaacattctcatattctatgacataatttctatagttcaacgaa 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6361 tagtttgttttcggggcaacattctcatattctatgacataatttctatagttcaacgaa 6420
Query: 523 aataaatttggtctataaggattaggggaaaacgactgttgtttgaacttccctcttctt 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6421 aataaatttggtctataaggattaggggaaaacgactgttgtttgaacttccctcttctt 6480
Query: 583 tcgtcaatgctaaccgcatgtctgatgtgacgaacgatgccgctcctagctgtataggga 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6481 tcgtcaatgctaaccgcatgtctgatgtgacgaacgatgccgctcctagctgtataggga 6540
Query: 643 aagagccgatctaaaagtataccacaagaattcaccgaatcaaagaagccttgaaaatgt 702
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 6541 aagagccgatctaaaagtataccacaagaattcaccgaatcaaagaggccttgaaaatgt 6600
Query: 703 attttcgatctcaatatttcttgaaaacgttttctttaattcatccaccaaa-tagtcgc 761
| |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct: 6601 a-tttcgatctcaatatttcttgaaaacgttttcttaaattcatccaccaaagtagtcgc 6659
Query: 762 ataactcggttgtaccggctgtgccgcgt-tttccaggcttcattttttttcca 814
||||||||||||||| |||||||| |||| || ||||||||||| | |||||||
Sbjct: 6660 ataactcggttgtacgggctgtgcagcgtattcccaggcttcatatattttcca 6713
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7001
Number of Sequences: 1807
Number of extensions: 7001
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 900
length of database: 10,358,551
effective HSP length: 16
effective length of query: 884
effective length of database: 10,329,639
effective search space: 9131400876
effective search space used: 9131400876
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)