BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZH06FM1.SCF screened BAC_end
(945 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig232 252 1e-66
>3x_Contig232
Length = 1614
Score = 252 bits (127), Expect = 1e-66
Identities = 196/214 (91%), Gaps = 4/214 (1%)
Strand = Plus / Plus
Query: 464 agaggaacccatctatcanatatttgagggtctaactcgaaatattcatcttcaccttga 523
|||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct: 1 agaggaacccatctatcaaatatttgagggtctaactcgaataattcatcttcaccttga 60
Query: 524 ttcttgttcgaacttccactttttgatacgaatttccgc-gtcaacagaccccgcttaag 582
| || ||||||||||||||||||||||||||| |||||| ||||||||| | |||| |||
Sbjct: 61 tcctggttcgaacttccactttttgatacgaa-ttccgcggtcaacagagcacgctgaag 119
Query: 583 attttgagaaactgctaattggggatcttggtccattcttaaatgacctttgcttaatgc 642
|| |||||||||||||||||| |||||||||||||||| | ||||| |||||||||||||
Sbjct: 120 atcttgagaaactgctaattgtggatcttggtccattc-tcaatgagctttgcttaatgc 178
Query: 643 ttatgctattgggggatttaacttttggttaaga 676
||||||||||| || | |||||||||||||||||
Sbjct: 179 ttatgctattgtggta-ttaacttttggttaaga 211
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8376
Number of Sequences: 1807
Number of extensions: 8376
Number of successful extensions: 58
Number of sequences better than 1.0e-20: 1
length of query: 945
length of database: 10,358,551
effective HSP length: 16
effective length of query: 929
effective length of database: 10,329,639
effective search space: 9596234631
effective search space used: 9596234631
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)