BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC27ZH06FM1.SCF screened BAC_end (945 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig232 252 1e-66 >3x_Contig232 Length = 1614 Score = 252 bits (127), Expect = 1e-66 Identities = 196/214 (91%), Gaps = 4/214 (1%) Strand = Plus / Plus Query: 464 agaggaacccatctatcanatatttgagggtctaactcgaaatattcatcttcaccttga 523 |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| Sbjct: 1 agaggaacccatctatcaaatatttgagggtctaactcgaataattcatcttcaccttga 60 Query: 524 ttcttgttcgaacttccactttttgatacgaatttccgc-gtcaacagaccccgcttaag 582 | || ||||||||||||||||||||||||||| |||||| ||||||||| | |||| ||| Sbjct: 61 tcctggttcgaacttccactttttgatacgaa-ttccgcggtcaacagagcacgctgaag 119 Query: 583 attttgagaaactgctaattggggatcttggtccattcttaaatgacctttgcttaatgc 642 || |||||||||||||||||| |||||||||||||||| | ||||| ||||||||||||| Sbjct: 120 atcttgagaaactgctaattgtggatcttggtccattc-tcaatgagctttgcttaatgc 178 Query: 643 ttatgctattgggggatttaacttttggttaaga 676 ||||||||||| || | ||||||||||||||||| Sbjct: 179 ttatgctattgtggta-ttaacttttggttaaga 211 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8376 Number of Sequences: 1807 Number of extensions: 8376 Number of successful extensions: 58 Number of sequences better than 1.0e-20: 1 length of query: 945 length of database: 10,358,551 effective HSP length: 16 effective length of query: 929 effective length of database: 10,329,639 effective search space: 9596234631 effective search space used: 9596234631 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)