BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZH06RM1.SCF screened BAC_end
(886 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1803 930 0.0
>3x_Contig1803
Length = 52241
Score = 930 bits (469), Expect = 0.0
Identities = 476/477 (99%), Gaps = 1/477 (0%)
Strand = Plus / Minus
Query: 44 gcttttatagagtcatcaatcgtaattttctgagacagctttgctttcaactgactccta 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37756 gcttttatagagtcatcaatcgtaattttctgagacagctttgctttcaactgactccta 37697
Query: 104 gccttttctatgcctgcttcatacgcatctctctctgctgcagcatccttaacaacattg 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37696 gccttttctatgcctgcttcatacgcatctctctctgctgcagcatccttaacaacattg 37637
Query: 164 tttaggccatcaatttcctgttcgatactctggagcgcctgtttaatctcttgaagctct 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37636 tttaggccatcaatttcctgttcgatactctggagcgcctgtttaatctcttgaagctct 37577
Query: 224 acttgaatttttttatattctcttttcgattgtttgaagtctcgtaaagtatccagtcta 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37576 acttgaatttttttatattctcttttcgattgtttgaagtctcgtaaagtatccagtcta 37517
Query: 284 ttactcttgtactgatccaagtaaccaccagataaaacacctttactgtctgcacgatca 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37516 ttactcttgtactgatccaagtaaccaccagataaaacacctttactgtctgcacgatca 37457
Query: 344 ccgtctaaagttatagcatttagtttgtattctttggcaagggaagcaccatcaatcaag 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37456 ccgtctaaagttatagcatttagtttgtattctttggcaagggaagcaccatcaatcaag 37397
Query: 404 gatttaacgacaagagttcggccaaaaacctgcttgatcactttctcaaatttcacgtca 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37396 gatttaacgacaagagttcggccaaaaacctgcttgatcactttctcaaatttcacgtca 37337
Query: 464 tacttgatctttttgattagaggtgtacattgatttttctcc-agttatttggatac 519
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 37336 tacttgatctttttgattagaggtgtacattgatttttctccaagttatttggatac 37280
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7156
Number of Sequences: 1807
Number of extensions: 7156
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 886
length of database: 10,358,551
effective HSP length: 16
effective length of query: 870
effective length of database: 10,329,639
effective search space: 8986785930
effective search space used: 8986785930
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)