BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC27ZH07RM1.SCF screened BAC_end
         (956 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig973                                                         1368   0.0  

>3x_Contig973 
          Length = 4038

 Score = 1368 bits (690), Expect = 0.0
 Identities = 715/722 (99%), Gaps = 1/722 (0%)
 Strand = Plus / Minus

                                                                        
Query: 45   gcttatccaataaaccaaatataactgtttaaaaactgtccttctcacaaaacaataaca 104
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1553 gcttatccaataaaccaaatataactgtttaaaaactgtccttctcacaaaacaataaca 1494

                                                                        
Query: 105  atttcagtgaaagttcaaatctaaaaccatataatttacatcattggtaaaacttggaac 164
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1493 atttcagtgaaagttcaaatctaaaaccatataatttacatcattggtaaaacttggaac 1434

                                                                        
Query: 165  tttggaatttctgattttcaatctgtgtaacatcttcagaaatgcctgaagggactggag 224
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1433 tttggaatttctgattttcaatctgtgtaacatcttcagaaatgcctgaagggactggag 1374

                                                                        
Query: 225  caatatgtgctaccgaaaaaagttggagcaataaataggggtcttggcctagaaacggac 284
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1373 caatatgtgctaccgaaaaaagttggagcaataaataggggtcttggcctagaaacggac 1314

                                                                        
Query: 285  gtatgattgtg-gttttggggggaatctctagtttttcggggggaaacccaaacccaaat 343
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1313 gtatgattgtgcgttttggggggaatctctagtttttcggggggaaacccaaacccaaat 1254

                                                                        
Query: 344  gatgaggtgagctgagtcgataacgttacccgggcacaaagtattaaggccccatcaaga 403
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1253 gatgaggtgagctgagtcgataacgttacccgggcacaaagtattaaggccccatcaaga 1194

                                                                        
Query: 404  gcataagttgagggctccctcatccataacaacatcgtcatcatcaatcaaaacaaatgc 463
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1193 gcataagttgagggctccctcatccataacaacatcgtcatcatcaatcaaaacaaatgc 1134

                                                                        
Query: 464  acgataccgaaggtatcgtgcaattaaaatatgaaacaatcctcttttttcaatccactt 523
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1133 acgataccgaaggtatcgtgcaattaaaatatgaaacaatcctcttttttcaatccactt 1074

                                                                        
Query: 524  cgtcatacactatcaacaggctgctcagcagtatttttcgttttagctaagattcttgca 583
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1073 cgtcatacactatcaacaggctgctcagcagtatttttcgttttagctaagattcttgca 1014

                                                                        
Query: 584  tttaacatcaatatccttacgtcgtaaacgtttcccttcctatcatcctgcccatcgcag 643
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1013 tttaacatcaatatccttacgtcgtaaacgtttcccttcctatcatcctgcccatcgcag 954

                                                                        
Query: 644  tcacttctagaaccgatattgcctttcttcaacgttgggccatagcatctcgacgaacta 703
            |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||
Sbjct: 953  tcacttctagaaccgatattgcctttcttcaacgttgggccatagcatccggacgaacta 894

                                                                        
Query: 704  acttcgtcgtaaaccactctaggtcttttttcaaggcttattgtgagtgcggaccattgg 763
            |||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||| |||
Sbjct: 893  acttcgtcgtaaaccactctaggtctctttccaaggctcattgtgagtgcggaccagtgg 834

              
Query: 764  tt 765
            ||
Sbjct: 833  tt 832


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7965
Number of Sequences: 1807
Number of extensions: 7965
Number of successful extensions: 61
Number of sequences better than 1.0e-20: 1
length of query: 956
length of database: 10,358,551
effective HSP length: 16
effective length of query: 940
effective length of database: 10,329,639
effective search space: 9709860660
effective search space used: 9709860660
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)