BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC27ZH07RM1.SCF screened BAC_end (956 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig973 1368 0.0 >3x_Contig973 Length = 4038 Score = 1368 bits (690), Expect = 0.0 Identities = 715/722 (99%), Gaps = 1/722 (0%) Strand = Plus / Minus Query: 45 gcttatccaataaaccaaatataactgtttaaaaactgtccttctcacaaaacaataaca 104 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1553 gcttatccaataaaccaaatataactgtttaaaaactgtccttctcacaaaacaataaca 1494 Query: 105 atttcagtgaaagttcaaatctaaaaccatataatttacatcattggtaaaacttggaac 164 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1493 atttcagtgaaagttcaaatctaaaaccatataatttacatcattggtaaaacttggaac 1434 Query: 165 tttggaatttctgattttcaatctgtgtaacatcttcagaaatgcctgaagggactggag 224 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1433 tttggaatttctgattttcaatctgtgtaacatcttcagaaatgcctgaagggactggag 1374 Query: 225 caatatgtgctaccgaaaaaagttggagcaataaataggggtcttggcctagaaacggac 284 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1373 caatatgtgctaccgaaaaaagttggagcaataaataggggtcttggcctagaaacggac 1314 Query: 285 gtatgattgtg-gttttggggggaatctctagtttttcggggggaaacccaaacccaaat 343 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1313 gtatgattgtgcgttttggggggaatctctagtttttcggggggaaacccaaacccaaat 1254 Query: 344 gatgaggtgagctgagtcgataacgttacccgggcacaaagtattaaggccccatcaaga 403 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1253 gatgaggtgagctgagtcgataacgttacccgggcacaaagtattaaggccccatcaaga 1194 Query: 404 gcataagttgagggctccctcatccataacaacatcgtcatcatcaatcaaaacaaatgc 463 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1193 gcataagttgagggctccctcatccataacaacatcgtcatcatcaatcaaaacaaatgc 1134 Query: 464 acgataccgaaggtatcgtgcaattaaaatatgaaacaatcctcttttttcaatccactt 523 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1133 acgataccgaaggtatcgtgcaattaaaatatgaaacaatcctcttttttcaatccactt 1074 Query: 524 cgtcatacactatcaacaggctgctcagcagtatttttcgttttagctaagattcttgca 583 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1073 cgtcatacactatcaacaggctgctcagcagtatttttcgttttagctaagattcttgca 1014 Query: 584 tttaacatcaatatccttacgtcgtaaacgtttcccttcctatcatcctgcccatcgcag 643 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1013 tttaacatcaatatccttacgtcgtaaacgtttcccttcctatcatcctgcccatcgcag 954 Query: 644 tcacttctagaaccgatattgcctttcttcaacgttgggccatagcatctcgacgaacta 703 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 953 tcacttctagaaccgatattgcctttcttcaacgttgggccatagcatccggacgaacta 894 Query: 704 acttcgtcgtaaaccactctaggtcttttttcaaggcttattgtgagtgcggaccattgg 763 |||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||| ||| Sbjct: 893 acttcgtcgtaaaccactctaggtctctttccaaggctcattgtgagtgcggaccagtgg 834 Query: 764 tt 765 || Sbjct: 833 tt 832 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7965 Number of Sequences: 1807 Number of extensions: 7965 Number of successful extensions: 61 Number of sequences better than 1.0e-20: 1 length of query: 956 length of database: 10,358,551 effective HSP length: 16 effective length of query: 940 effective length of database: 10,329,639 effective search space: 9709860660 effective search space used: 9709860660 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)