BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZH08FM1.SCF screened BAC_end
(919 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1330 1334 0.0
>3x_Contig1330
Length = 7703
Score = 1334 bits (673), Expect = 0.0
Identities = 720/729 (98%), Gaps = 5/729 (0%)
Strand = Plus / Plus
Query: 86 ccaatcagaacacattacttttaaatgagttagagcaatattttgcaggaaatagtttat 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5571 ccaatcagaacacattacttttaaatgagttagagcaatattttgcaggaaatagtttat 5630
Query: 146 tacctgcggacgatttacccacaagtaaggcacctgtcaaaattaaaaaatcgttactgc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5631 tacctgcggacgatttacccacaagtaaggcacctgtcaaaattaaaaaatcgttactgc 5690
Query: 206 tccacatatggcttaattacatagctggttccatgtctattaatgagttagaccaaagat 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5691 tccacatatggcttaattacatagctggttccatgtctattaatgagttagaccaaagat 5750
Query: 266 gtgttctttctagtacctgtttcaagttagcaaagcaacaatatctaccgtacctaagat 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5751 gtgttctttctagtacctgtttcaagttagcaaagcaacaatatctaccgtacctaagat 5810
Query: 326 atcttgtcggtatttggaatttaatgaataataccattgcgatgaacagcaaagaagttg 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5811 atcttgtcggtatttggaatttaatgaataataccattgcgatgaacagcaaagaagttg 5870
Query: 386 ctttgacaaaagcaaggttagatcaaatcgtcaaagatctaaaagccaactctgacactg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5871 ctttgacaaaagcaaggttagatcaaatcgtcaaagatctaaaagccaactctgacactg 5930
Query: 446 aaactacagccaatagtacatcatagatttatcatatgttatctataaatcttaaagaat 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5931 aaactacagccaatagtacatcatagatttatcatatgttatctataaatcttaaagaat 5990
Query: 506 aacttcaatttgcataaaataaaaacgactaaatactctctaatctactggaatattaat 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5991 aacttcaatttgcataaaataaaaacgactaaatactctctaatctactggaatattaat 6050
Query: 566 tattcttggatgactttttcagaccattgtttgaagatgtcgatcttttcatggcatatg 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6051 tattcttggatgactttttcagaccattgtttgaagatgtcgatcttttcatggcatatg 6110
Query: 626 cagcacttgcttgctcagatctcaaactactttcactatccttcagatgtcctctatcat 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6111 cagcacttgcttgctcagatctcaaactactttcactatccttcagatgtcctctatcat 6170
Query: 686 ttagatcaacagtaccggccactttggaataaagagacatctccaacaagtaaccctaga 745
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 6171 ctagatcaacagtaccgg-cactttggaataaagagacatctccaacaagtaaccctaga 6229
Query: 746 gtatttagcacttgttgtggatcaagtgaggttaggcttttggcgaacgtttttttggga 805
|||| |||||||||||||||||| ||||||| ||||||||| |||| ||| ||||| |||
Sbjct: 6230 gtatctagcacttgttgtggatc-agtgagg-taggctttt-gcgaccgtcttttt-gga 6285
Query: 806 agcagaacc 814
|||||||||
Sbjct: 6286 agcagaacc 6294
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6934
Number of Sequences: 1807
Number of extensions: 6934
Number of successful extensions: 33
Number of sequences better than 1.0e-20: 1
length of query: 919
length of database: 10,358,551
effective HSP length: 16
effective length of query: 903
effective length of database: 10,329,639
effective search space: 9327664017
effective search space used: 9327664017
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)