BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZH08RM1.SCF screened BAC_end
(916 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1625 1225 0.0
3x_Contig1746 145 2e-34
3x_Contig1671 145 2e-34
3x_Contig1276 145 2e-34
3x_Contig384 145 2e-34
>3x_Contig1625
Length = 13618
Score = 1225 bits (618), Expect = 0.0
Identities = 710/729 (97%), Gaps = 9/729 (1%)
Strand = Plus / Plus
Query: 46 tgaaggaaagaagagcaaagaaggaagaacaagaaaggtacgatagattggctgccaaga 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8056 tgaaggaaagaagagcaaagaaggaagaacaagaaaggtacgatagattggctgccaaga 8115
Query: 106 tgcacgctaagaaggtcgatagactaagaagaagagaaaagagaaataaggctttgaaag 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8116 tgcacgctaagaaggtcgatagactaagaagaagagaaaagagaaataaggctttgaaag 8175
Query: 166 agcgttgagacataaagtcataaatactgtataatagaataaagacatatctgcattaac 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8176 agcgttgagacataaagtcataaatactgtataatagaataaagacatatctgcattaac 8235
Query: 226 gatttaggcttgttccgtcctccgcaattgtatatactgacgatgaaaaagtatgtggga 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8236 gatttaggcttgttccgtcctccgcaattgtatatactgacgatgaaaaagtatgtggga 8295
Query: 286 aattgacaaaaattaaaaccaatttgctgcttctgtggatcgaacacaggaccttatgaa 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8296 aattgacaaaaattaaaaccaatttgctgcttctgtggatcgaacacaggaccttatgaa 8355
Query: 346 cttcagtcatacgctctcccaactgagctaaagcagccaaattaattacaagaaccagtt 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8356 cttcagtcatacgctctcccaactgagctaaagcagccaaattaattacaagaaccagtt 8415
Query: 406 ttctttcgctcaccttgcactaaaattactgttatggatatttctcaatgattttctaat 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8416 ttctttcgctcaccttgcactaaaattactgttatggatatttctcaatgattttctaat 8475
Query: 466 gatggatgtgagtgtcaacttaacgatagaacaggattaagtttatagtgtatgagatac 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8476 gatggatgtgagtgtcaacttaacgatagaacaggattaagtttatagtgtatgagatac 8535
Query: 526 gtctcggtacgctctgatatntcgaacggtgaatttattagtgctctgtt-aaagggatc 584
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct: 8536 gtctcggtacgctctgatatttcgaacggtgaatttattagtgctctgttaaaagggatc 8595
Query: 585 ttttgctcagtgccgttgaaat-attgaaacaatgtcaaa-gatttgggagagattatcc 642
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct: 8596 ttttgctcagtgccgttgaaataattgaaacaatgtcaaaggatttgggagagattatcc 8655
Query: 643 tttcggat-aagggcatttactggagcttatagatgaggatgttccggcaatcaacgtaa 701
||||||| |||| ||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 8656 attcggataaaggccatttactggagcttatagatgaggatgttcagtcaatcaacgtaa 8715
Query: 702 tttaaaaccaggcctcaagagcaattcaagggaccccggtaccggtttaaaaagaaggaa 761
||||||||| || || |||||||| ||| ||||||| ||||| || ||||||| |||||
Sbjct: 8716 -ttaaaaccaagcttcgagagcaatccaa-ggacccc-gtacc-gtctaaaaag-aggaa 8770
Query: 762 aatgaacga 770
|||||||||
Sbjct: 8771 aatgaacga 8779
>3x_Contig1746
Length = 26672
Score = 145 bits (73), Expect = 2e-34
Identities = 73/73 (100%)
Strand = Plus / Minus
Query: 310 tgctgcttctgtggatcgaacacaggaccttatgaacttcagtcatacgctctcccaact 369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12219 tgctgcttctgtggatcgaacacaggaccttatgaacttcagtcatacgctctcccaact 12160
Query: 370 gagctaaagcagc 382
|||||||||||||
Sbjct: 12159 gagctaaagcagc 12147
>3x_Contig1671
Length = 12265
Score = 145 bits (73), Expect = 2e-34
Identities = 73/73 (100%)
Strand = Plus / Minus
Query: 310 tgctgcttctgtggatcgaacacaggaccttatgaacttcagtcatacgctctcccaact 369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5284 tgctgcttctgtggatcgaacacaggaccttatgaacttcagtcatacgctctcccaact 5225
Query: 370 gagctaaagcagc 382
|||||||||||||
Sbjct: 5224 gagctaaagcagc 5212
>3x_Contig1276
Length = 6662
Score = 145 bits (73), Expect = 2e-34
Identities = 73/73 (100%)
Strand = Plus / Plus
Query: 310 tgctgcttctgtggatcgaacacaggaccttatgaacttcagtcatacgctctcccaact 369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 tgctgcttctgtggatcgaacacaggaccttatgaacttcagtcatacgctctcccaact 692
Query: 370 gagctaaagcagc 382
|||||||||||||
Sbjct: 693 gagctaaagcagc 705
>3x_Contig384
Length = 1678
Score = 145 bits (73), Expect = 2e-34
Identities = 73/73 (100%)
Strand = Plus / Plus
Query: 310 tgctgcttctgtggatcgaacacaggaccttatgaacttcagtcatacgctctcccaact 369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1446 tgctgcttctgtggatcgaacacaggaccttatgaacttcagtcatacgctctcccaact 1505
Query: 370 gagctaaagcagc 382
|||||||||||||
Sbjct: 1506 gagctaaagcagc 1518
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7443
Number of Sequences: 1807
Number of extensions: 7443
Number of successful extensions: 79
Number of sequences better than 1.0e-20: 5
length of query: 916
length of database: 10,358,551
effective HSP length: 16
effective length of query: 900
effective length of database: 10,329,639
effective search space: 9296675100
effective search space used: 9296675100
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)