BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC27ZH09RM1.SCF screened BAC_end
         (941 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1128                                                         603   e-172

>3x_Contig1128 
          Length = 4759

 Score =  603 bits (304), Expect = e-172
 Identities = 338/347 (97%), Gaps = 2/347 (0%)
 Strand = Plus / Plus

                                                                        
Query: 44   gcttcggaaccaaccaagaaggctttgatggtagaagttttgatccatggcaagtattga 103
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 4414 gcttcggaaccaaccaagaaggcttcgatggtagaagttttgatccatggcaagtattga 4473

                                                                        
Query: 104  gtcaaagcttgcttttcttcttcgaaatgagcagaatcagttggccaaatacccaagaaa 163
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4474 gtcaaagcttgcttttcttcttcgaaatgagcagaatcagttggccaaatacccaagaaa 4533

                                                                        
Query: 164  atggtaaatccggcttcttctgcagcaggacccaaaatttgtaaagtgttacaatcttat 223
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | 
Sbjct: 4534 atggtaaatccggcttcttctgcagcaggacccaaaatttgtaaagtgttacaatcaga- 4592

                                                                        
Query: 224  agcagcatatactttgaccttggaggtgtaacccttcaaagtttcgaaatcagctaaata 283
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4593 agcagcatatactttgaccttggaggtgtaacccttcaaagtttcgaaatcagctaaata 4652

                                                                        
Query: 284  atcatccttttgcttacaagaaccatcgt-gggtcttaacacctaagttgaatgcaagct 342
            ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 4653 atcatccttttgcttacaagaaccatcgtggggtcttaacacctaagntgaatgcaagct 4712

                                                           
Query: 343  caccaacagcagcaacagttgaagcaccggccaacaaagtggcagaa 389
            ||||||||||||||||||||  |||||||||||||| ||||||||||
Sbjct: 4713 caccaacagcagcaacagtttgagcaccggccaacatagtggcagaa 4759


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9079
Number of Sequences: 1807
Number of extensions: 9079
Number of successful extensions: 106
Number of sequences better than 1.0e-20: 1
length of query: 941
length of database: 10,358,551
effective HSP length: 16
effective length of query: 925
effective length of database: 10,329,639
effective search space: 9554916075
effective search space used: 9554916075
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)