BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC27ZH09RM1.SCF screened BAC_end (941 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1128 603 e-172 >3x_Contig1128 Length = 4759 Score = 603 bits (304), Expect = e-172 Identities = 338/347 (97%), Gaps = 2/347 (0%) Strand = Plus / Plus Query: 44 gcttcggaaccaaccaagaaggctttgatggtagaagttttgatccatggcaagtattga 103 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 4414 gcttcggaaccaaccaagaaggcttcgatggtagaagttttgatccatggcaagtattga 4473 Query: 104 gtcaaagcttgcttttcttcttcgaaatgagcagaatcagttggccaaatacccaagaaa 163 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4474 gtcaaagcttgcttttcttcttcgaaatgagcagaatcagttggccaaatacccaagaaa 4533 Query: 164 atggtaaatccggcttcttctgcagcaggacccaaaatttgtaaagtgttacaatcttat 223 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 4534 atggtaaatccggcttcttctgcagcaggacccaaaatttgtaaagtgttacaatcaga- 4592 Query: 224 agcagcatatactttgaccttggaggtgtaacccttcaaagtttcgaaatcagctaaata 283 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4593 agcagcatatactttgaccttggaggtgtaacccttcaaagtttcgaaatcagctaaata 4652 Query: 284 atcatccttttgcttacaagaaccatcgt-gggtcttaacacctaagttgaatgcaagct 342 ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| Sbjct: 4653 atcatccttttgcttacaagaaccatcgtggggtcttaacacctaagntgaatgcaagct 4712 Query: 343 caccaacagcagcaacagttgaagcaccggccaacaaagtggcagaa 389 |||||||||||||||||||| |||||||||||||| |||||||||| Sbjct: 4713 caccaacagcagcaacagtttgagcaccggccaacatagtggcagaa 4759 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9079 Number of Sequences: 1807 Number of extensions: 9079 Number of successful extensions: 106 Number of sequences better than 1.0e-20: 1 length of query: 941 length of database: 10,358,551 effective HSP length: 16 effective length of query: 925 effective length of database: 10,329,639 effective search space: 9554916075 effective search space used: 9554916075 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)