BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZH10FM1.SCF screened BAC_end
(1056 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1786 450 e-126
>3x_Contig1786
Length = 33838
Score = 450 bits (227), Expect = e-126
Identities = 262/267 (98%), Gaps = 5/267 (1%)
Strand = Plus / Minus
Query: 86 taaatttggtccatagaaaatcaaacaaatctaagataatcttttttaatcatcatgtat 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24298 taaatttggtccatagaaaatcaaacaaatctaagataatcttttttaatcatcatgtat 24239
Query: 146 tatcaatatttagtctccattttcataatactaactttgtaggttcttgtcctttttacg 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24238 tatcaatatttagtctccattttcataatactaactttgtaggttcttgtcctttttacg 24179
Query: 206 tgatgttacattttggatgctgtataattcggatttgggtttattccttttttttttttg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24178 tgatgttacattttggatgctgtataattcggatttgggtttattccttttttttttttg 24119
Query: 266 ttacttcttgtagtactttcttttagctcaaaag-tg-tatataaagag-gttaaggttg 322
|||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||
Sbjct: 24118 ttacttcttgtagtactttcttttagctcaaaagctgctatataaagagcgttaaggttg 24059
Query: 323 acttcaag-attttttggaggataatg 348
|| ||||| ||||||||||||||||||
Sbjct: 24058 ac-tcaagaattttttggaggataatg 24033
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 18,621
Number of Sequences: 1807
Number of extensions: 18621
Number of successful extensions: 184
Number of sequences better than 1.0e-20: 1
length of query: 1056
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1040
effective length of database: 10,329,639
effective search space: 10742824560
effective search space used: 10742824560
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)