BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZH10RM1.SCF screened BAC_end
(930 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1144 1049 0.0
>3x_Contig1144
Length = 4618
Score = 1049 bits (529), Expect = 0.0
Identities = 581/593 (97%), Gaps = 4/593 (0%)
Strand = Plus / Minus
Query: 49 cttattcaatattatgtgaaggttggagaatttgataagttcctattgtgttatgtgatt 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1275 cttattcaatattatgtgaaggttggagaatttgataagttcctattgtgttatgtgatt 1216
Query: 109 ttcaaactgggactaattaagggtaagacattaatcttcgttaacaatatcgatagagga 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1215 ttcaaactgggactaattaagggtaagacattaatcttcgttaacaatatcgatagagga 1156
Query: 169 tacagactaaagctagttttagaacagtttggtattaagatcttgcattttgaacagtga 228
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1155 tacagactaaagctagttttagaacagtttggtattaa-atcttgcattttgaacagtga 1097
Query: 229 actgccagcaaattcaagacagcatatcgtataagaattcaacaagaacgtttatcaact 288
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 1096 actgccagcaaattcaagacagcatatcgtagaagaattcaacaagaacgtttatcaact 1037
Query: 289 gttaatagctacagacgatactgaatatatcaaagaagaagacgaagacttagaatcaga 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1036 gttaatagctacagacgatactgaatatatcaaagaagaagacgaagacttagaatcaga 977
Query: 349 aaaaactgaggatggtttagttgaggttgtcgatgattccactgttactacgaaagacaa 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 976 aaaaactgaggatggtttagttgaggttgtcgatgattccactgttactacgaaagacaa 917
Query: 409 tgcaaagaaacaaaagaagccaaagctaaacgtggagaaagacaaagaatatggtgtatc 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 916 tgcaaagaaacaaaagaagccaaagctaaacgtggagaaagacaaagaatatggtgtatc 857
Query: 469 tcgcggtgtggacttcaaaaatgttgcctgtgtattaaactttgatctaccaaccactgc 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 856 tcgcggtgtggacttcaaaaatgttgcctgtgtattaaactttgatctaccaaccactgc 797
Query: 529 aaaatcgtatgtacatagaattggtagaacagctcgtgcagggaagtcaggaattccta- 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 796 aaaatcgtatgtacatagaattggtagaacagctcgtgcagggaagtcaggaatttctat 737
Query: 588 ttcttttggtggccctttg-agggattcgggaa-cattaaccttctatgatca 638
|||||||| || |||||| ||| ||||||||| ||| |||| ||||||||||
Sbjct: 736 ttcttttgttgttcctttgaaggaattcgggaagcataaaccatctatgatca 684
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7480
Number of Sequences: 1807
Number of extensions: 7480
Number of successful extensions: 69
Number of sequences better than 1.0e-20: 1
length of query: 930
length of database: 10,358,551
effective HSP length: 16
effective length of query: 914
effective length of database: 10,329,639
effective search space: 9441290046
effective search space used: 9441290046
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)