BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZH11FM1.SCF screened BAC_end
(954 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1224 430 e-120
>3x_Contig1224
Length = 5948
Score = 430 bits (217), Expect = e-120
Identities = 284/299 (94%), Gaps = 7/299 (2%)
Strand = Plus / Plus
Query: 436 atgcagggtgtgtattcatggaagaaatgcatctatatacactaatcatgtgacttacaa 495
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 atgcagggtgtgtatt-atggaagaaatgcatctatatacactaatcatgtgacttacaa 61
Query: 496 aatgaaattaccagtagaatatctttgagtagtattaagtgttagaaactctcggtttat 555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 aatgaaattaccagtagaatatctttgagtagtattaagtgttagaaactctcggtttat 121
Query: 556 tgaacattgctctcatcatattgtgatatgccttgagccctatctccgaacgcaatgcta 615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 tgaacattgctctcatcatattgtgatatgccttgagccctatctccgaacgcaatgcta 181
Query: 616 tactcatttctggttgnatgagaattctgggttgtttctcttcagttgtcgggaatcgat 675
|||||||||||||||| ||||||||||| |||||||||||| ||||||| |||||||||
Sbjct: 182 tactcatttctggttgtatgagaattct-ggttgtttctctcaagttgtc-ggaatcgat 239
Query: 676 taacacaagtttggtttaaagattcagaggcaaagaaacaacaactgtgaattattgct 734
| |||||||| | || |||| ||||||||||||||| |||||||||| |||||||||
Sbjct: 240 aaccacaagtt--ggttcaaga-tcagaggcaaagaaaaaacaactgtg-attattgct 294
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7395
Number of Sequences: 1807
Number of extensions: 7395
Number of successful extensions: 61
Number of sequences better than 1.0e-20: 1
length of query: 954
length of database: 10,358,551
effective HSP length: 16
effective length of query: 938
effective length of database: 10,329,639
effective search space: 9689201382
effective search space used: 9689201382
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)