BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC27ZH12FM1.SCF screened BAC_end (970 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1468 971 0.0 >3x_Contig1468 Length = 9852 Score = 971 bits (490), Expect = 0.0 Identities = 570/586 (97%), Gaps = 8/586 (1%) Strand = Plus / Minus Query: 86 tgccgtaatcctttgacatgcaaaataactttggattatctgtcaactctggatttagat 145 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5098 tgccgtaatcctttgacatgcaaaataactttggattatctgtcaactctggatttagat 5039 Query: 146 aaggttcttctaagcatggacccaaaggtgtctgtgttgtctcattggaatggagagcct 205 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5038 aaggttcttctaagcatggacccaaaggtgtctgtgttgtctcattggaatggagagcct 4979 Query: 206 ttcaacggagatttttacaagtacacctcgaaatttttaaactcgccagctatcggatct 265 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4978 ttcaacggagattttgacaagtacacctcgaaatttttaaactcgccagctatcggatct 4919 Query: 266 cttctttattttttgaaatatagaagtcttctaatgcaatttctaagtttgagtgtccat 325 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4918 cttctttattttttgaaatatagaagtcttctaatgcaatttctaagtttgagtgtccat 4859 Query: 326 actttctcctatgcggccaataattcaaaatgtgatgacctcatgaaagctcttgtttct 385 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4858 actttctcctatgcggccaataattcaaaatgtgatgacctcatgaaagctcttgtttct 4799 Query: 386 aacgctatacattcagcgacaatcttttcctttttggatacgttaaacttgaaatctcaa 445 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4798 aacgctatacattcagcgacaatcttttcctttttggatacgttaaacttgaaatctcaa 4739 Query: 446 gctccttccactgatcccttttaagacattactattttggaaggctttggatctcagcct 505 ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| Sbjct: 4738 gctccttccactgatccctttaaagacattactattttggaaggc-ttggatctcagcct 4680 Query: 506 ggacaaagttgaaaagaattcatcgattaaagggatctctttattgattttccgaacctt 565 |||||||||||||||||||||||||| |||| ||||||||||| ||||||| |||||| | Sbjct: 4679 ggacaaagttgaaaagaattcatcga-taaatggatctcttta-tgatttttcgaacc-t 4623 Query: 566 ggattccctgattgagcttaaagaaacggtctgaaaacttacctctcgaatacatcaagg 625 ||||||||||||||||||| ||||||||||||| ||||||||||||||| |||||| ||| Sbjct: 4622 ggattccctgattgagctt-aagaaacggtctg-aaacttacctctcgattacatc-agg 4566 Query: 626 gcatccaatagatgcccaacagctgggagttcggctctgaaaaaga 671 ||||||||||||||||||||||||| || |||||||||| ||||| Sbjct: 4565 tcatccaatagatgcccaacagctggaag-tcggctctgagaaaga 4521 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9396 Number of Sequences: 1807 Number of extensions: 9396 Number of successful extensions: 64 Number of sequences better than 1.0e-20: 1 length of query: 970 length of database: 10,358,551 effective HSP length: 16 effective length of query: 954 effective length of database: 10,329,639 effective search space: 9854475606 effective search space used: 9854475606 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)