BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC27ZH12FM1.SCF screened BAC_end
         (970 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1468                                                         971   0.0  

>3x_Contig1468 
          Length = 9852

 Score =  971 bits (490), Expect = 0.0
 Identities = 570/586 (97%), Gaps = 8/586 (1%)
 Strand = Plus / Minus

                                                                        
Query: 86   tgccgtaatcctttgacatgcaaaataactttggattatctgtcaactctggatttagat 145
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5098 tgccgtaatcctttgacatgcaaaataactttggattatctgtcaactctggatttagat 5039

                                                                        
Query: 146  aaggttcttctaagcatggacccaaaggtgtctgtgttgtctcattggaatggagagcct 205
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5038 aaggttcttctaagcatggacccaaaggtgtctgtgttgtctcattggaatggagagcct 4979

                                                                        
Query: 206  ttcaacggagatttttacaagtacacctcgaaatttttaaactcgccagctatcggatct 265
            ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4978 ttcaacggagattttgacaagtacacctcgaaatttttaaactcgccagctatcggatct 4919

                                                                        
Query: 266  cttctttattttttgaaatatagaagtcttctaatgcaatttctaagtttgagtgtccat 325
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4918 cttctttattttttgaaatatagaagtcttctaatgcaatttctaagtttgagtgtccat 4859

                                                                        
Query: 326  actttctcctatgcggccaataattcaaaatgtgatgacctcatgaaagctcttgtttct 385
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4858 actttctcctatgcggccaataattcaaaatgtgatgacctcatgaaagctcttgtttct 4799

                                                                        
Query: 386  aacgctatacattcagcgacaatcttttcctttttggatacgttaaacttgaaatctcaa 445
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4798 aacgctatacattcagcgacaatcttttcctttttggatacgttaaacttgaaatctcaa 4739

                                                                        
Query: 446  gctccttccactgatcccttttaagacattactattttggaaggctttggatctcagcct 505
            ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 4738 gctccttccactgatccctttaaagacattactattttggaaggc-ttggatctcagcct 4680

                                                                        
Query: 506  ggacaaagttgaaaagaattcatcgattaaagggatctctttattgattttccgaacctt 565
            |||||||||||||||||||||||||| |||| ||||||||||| ||||||| |||||| |
Sbjct: 4679 ggacaaagttgaaaagaattcatcga-taaatggatctcttta-tgatttttcgaacc-t 4623

                                                                        
Query: 566  ggattccctgattgagcttaaagaaacggtctgaaaacttacctctcgaatacatcaagg 625
            ||||||||||||||||||| ||||||||||||| ||||||||||||||| |||||| |||
Sbjct: 4622 ggattccctgattgagctt-aagaaacggtctg-aaacttacctctcgattacatc-agg 4566

                                                          
Query: 626  gcatccaatagatgcccaacagctgggagttcggctctgaaaaaga 671
             ||||||||||||||||||||||||| || |||||||||| |||||
Sbjct: 4565 tcatccaatagatgcccaacagctggaag-tcggctctgagaaaga 4521


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9396
Number of Sequences: 1807
Number of extensions: 9396
Number of successful extensions: 64
Number of sequences better than 1.0e-20: 1
length of query: 970
length of database: 10,358,551
effective HSP length: 16
effective length of query: 954
effective length of database: 10,329,639
effective search space: 9854475606
effective search space used: 9854475606
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)