BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZH12RM1.SCF screened BAC_end
(947 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1744 1215 0.0
>3x_Contig1744
Length = 24119
Score = 1215 bits (613), Expect = 0.0
Identities = 723/752 (96%), Gaps = 6/752 (0%)
Strand = Plus / Minus
Query: 44 ttaagtgctcatt-ac-caaatcttccatcgccaacgtcagacagccatcaatgggtcct 101
||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 15914 ttaagtgctcatttacacaaaccttccatcgccaacgtcagacagccatcaatgggtcct 15855
Query: 102 actttcggtgtgaaaggtggtgctgcaggtggtgggtatgctcaggttatcccaatggat 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15854 actttcggtgtgaaaggtggtgctgcaggtggtgggtatgctcaggttatcccaatggat 15795
Query: 162 gatttcaacatgcatttaactggtgatattcatgcaatcggtgctgctan-aattgacta 220
|| |||||||||||||||||||||||||||||||||||||||||||||| || | ||||
Sbjct: 15794 gagttcaacatgcatttaactggtgatattcatgcaatcggtgctgctaataacttacta 15735
Query: 221 gcagcagccatagatacaaggatgttccatgaggctactcaaaagaagcacgaaacgttt 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15734 gcagcagccatagatacaaggatgttccatgaggctactcaaaagaagcacgaaacgttt 15675
Query: 281 tacaagagattggtccctgttaagaagggtgtcagatcatttacaccatctatgttgaca 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15674 tacaagagattggtccctgttaagaagggtgtcagatcatttacaccatctatgttgaca 15615
Query: 341 aggttgaacaaattaggaattaacaaaactaatcctgatgatttaaataccgaggaaatt 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15614 aggttgaacaaattaggaattaacaaaactaatcctgatgatttaaataccgaggaaatt 15555
Query: 401 atcaaattcgcacgtctaaacattgacccagacactattactatcaagagggtggttgac 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15554 atcaaattcgcacgtctaaacattgacccagacactattactatcaagagggtggttgac 15495
Query: 461 gtcaacgatagaatgttacgtcaaatcacaattggtcaagcgccaactgaaaagggtttc 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15494 gtcaacgatagaatgttacgtcaaatcacaattggtcaagcgccaactgaaaagggtttc 15435
Query: 521 acaaggcaaacaggatttgacatcactgtcgcatcagagttgatggcaattttagcgttg 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15434 acaaggcaaacaggatttgacatcactgtcgcatcagagttgatggcaattttagcgttg 15375
Query: 581 tctaaggacttgaaagattggagagagcgtgtcggacgtatcgtaattggctctaactac 640
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 15374 tctaaggacttgaaagatttgagagagcgtgtcggacgtatcgtaattggctctaactac 15315
Query: 641 gaaaaagaacctataactgttaacgacattggatgtgcctgtgcccttgctgcactttta 700
|||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||
Sbjct: 15314 gaaaaagaacctataactgttaacgacattggatgtgcaggtgccattgctgcacttcta 15255
Query: 701 aaggaaggccgaaaaccccacctgatgcaaacgcttggaagggacaccaatttttggttc 760
||||| | | ||| || ||||||||||||||||| ||||||||||| | |||||||||
Sbjct: 15254 aaggatgccgtaaagcctaacctgatgcaaacgctt-gaagggacacc-agttttggttc 15197
Query: 761 aaggctgggccattggcaaacatttttattgg 792
| ||||| ||||| |||||||| | ||||||
Sbjct: 15196 -atgctggtccatttgcaaacatctctattgg 15166
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6010
Number of Sequences: 1807
Number of extensions: 6010
Number of successful extensions: 36
Number of sequences better than 1.0e-20: 1
length of query: 947
length of database: 10,358,551
effective HSP length: 16
effective length of query: 931
effective length of database: 10,329,639
effective search space: 9616893909
effective search space used: 9616893909
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)