BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC28ZA01RM1.SCF screened BAC_end
(951 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1193 737 0.0
>3x_Contig1193
Length = 4968
Score = 737 bits (372), Expect = 0.0
Identities = 414/420 (98%), Gaps = 6/420 (1%)
Strand = Plus / Plus
Query: 48 aagcagcagaattattgattgacagattccctctaccaagattcattgatactgaggctg 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4457 aagcagcagaattattgattgacagattccctctaccaagattcattgatactgaggctg 4516
Query: 108 gcggttcgcaagccagattcttgttatccaagttgaacccatctgacagttatcaaagtg 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4517 gcggttcgcaagccagattcttgttatccaagttgaacccatctgacagttatcaaagtg 4576
Query: 168 gtgctgtcgctggttcaactatcgtgttgactgatgatgtttctttacaaaatttcatgt 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4577 gtgctgtcgctggttcaactatcgtgttgactgatgatgtttctttacaaaatttcatgt 4636
Query: 228 cccacttgcaacaagtaactgttaatggtcaaacataattattgtcctgatggcagtagt 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4637 cccacttgcaacaagtaactgttaatggtcaaacataattattgtcctgatggcagtagt 4696
Query: 288 gttgaacataccatgcttatgctttccaaccaggtacatatttgataaaaatctcataaa 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4697 gttgaacataccatgcttatgctttccaaccaggtacatatttgataaaaatctcataaa 4756
Query: 348 gcgttttatgagcatatgttatataaattagtcctatataatgata-ctgattgctaaat 406
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 4757 gcgttttatgagcatatgttatataaattagtcctatataatgatacctgattgctaaat 4816
Query: 407 tactaaaccagggtcattaaagttcgaatacccacatatctaaagacgtaccatcaaaaa 466
|||||||||| ||||| ||||||||||||| |||||||||| |||||||| |||||||||
Sbjct: 4817 tactaaacca-ggtca-taaagttcgaata-ccacatatct-aagacgta-catcaaaaa 4871
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8380
Number of Sequences: 1807
Number of extensions: 8380
Number of successful extensions: 60
Number of sequences better than 1.0e-20: 1
length of query: 951
length of database: 10,358,551
effective HSP length: 16
effective length of query: 935
effective length of database: 10,329,639
effective search space: 9658212465
effective search space used: 9658212465
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)